Automated Organization ProfileDepartment of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich
Department of Biology, Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zürich
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets in this organization
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the organization's datasets
Total Mentions
Total mentions of the organization's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 1.0 (sum of 3 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
Functionally and Evolutionarily Significant Novel (FESNov) gene family predictions. This repository includes:GTBD r202 taxonomic labels for all the genomes analyzed (genome2taxonomy.r202.tab)Plasflow and Seeker predictions for all the genomes analyzed (plasflow.json.gz and seeker.json.gz)Fasta files for each FESNov gene family (FESNov_families.fasta.tar.gz)Gene family trees for each FESNov gene family (FESNov_families.trees.tar.gz)HMM profiles for each FESNov gene family (FESNov_families.hmm.tar.gz)FESNov gene family statistics (FESNov_fams_stats.tab)Functional predictions and habitat distribution of all FESNov gene families (FESNov_fams_funct_hab_info.json.gz)FESNov gene family PDB files with structure predictions by AlphaFold (FESNov_families.pdb.tar.gz), and their associated pLDDT values (pLDDT_values.tab)
Authors
- Rodriguez del Rio, Alvaro ;
- Giner-Lamia, Joaquín ;
- P. Cantalapiedra, Carlos ;
- Botas, Jorge ;
- Deng, Ziqi ;
- Hernandez-Plaza, Ana ;
- Marti, Munar-Palmer ;
- Santamaría-Hernando, Saray ;
- Rodríguez-Herva, Jose J ;
- Ruscheweyh, Hans-Joachim ;
- Paoli, Lucas ;
- S.B. Schmidt, Thomas ;
- Sunagawa, Sinichi ;
- Bork, Peer ;
- Emilia, López-Solanilla ;
- Luis Pedro, Coelho ;
- Huerta-Cepas, Jaime
Functionally and Evolutionarily Significant Novel (FESNov) gene family predictions. This repository includes:GTBD r202 taxonomic labels for all the genomes analyzed (genome2taxonomy.r202.tab)Plasflow and Seeker predictions for all the genomes analyzed (plasflow.json.gz and seeker.json.gz)Fasta files for each FESNov gene family (FESNov_families.fasta.tar.gz)Gene family trees for each FESNov gene family (FESNov_families.trees.tar.gz)HMM profiles for each FESNov gene family (FESNov_families.hmm.tar.gz)FESNov gene family statistics (FESNov_fams_stats.tab)Functional predictions and habitat distribution of all FESNov gene families (FESNov_fams_funct_hab_info.json.gz)FESNov gene family PDB files with structure predictions by AlphaFold (FESNov_families.pdb.tar.gz), and their associated pLDDT values (pLDDT_values.tab)
Authors
- Rodriguez del Rio, Alvaro ;
- Giner-Lamia, Joaquín ;
- P. Cantalapiedra, Carlos ;
- Botas, Jorge ;
- Deng, Ziqi ;
- Hernandez-Plaza, Ana ;
- Marti, Munar-Palmer ;
- Santamaría-Hernando, Saray ;
- Rodríguez-Herva, Jose J ;
- Ruscheweyh, Hans-Joachim ;
- Paoli, Lucas ;
- S.B. Schmidt, Thomas ;
- Sunagawa, Sinichi ;
- Bork, Peer ;
- Emilia, López-Solanilla ;
- Luis Pedro, Coelho ;
- Huerta-Cepas, Jaime
Protein structure predictions of 389,638 Functionally and Evolutionarily Significant Novel (FESNov) gene families
Authors
- Rodriguez del Rio, Alvaro ;
- Giner-Lamia, Joaquín ;
- P. Cantalapiedra, Carlos ;
- Botas, Jorge ;
- Deng, Ziqi ;
- Hernandez-Plaza, Ana ;
- Marti, Munar-Palmer ;
- Santamaría-Hernando, Saray ;
- Rodríguez-Herva, Jose J ;
- Ruscheweyh, Hans-Joachim ;
- Paoli, Lucas ;
- S.B. Schmidt, Thomas ;
- Sunagawa, Sinichi ;
- Bork, Peer ;
- Emilia, López-Solanilla ;
- Luis Pedro, Coelho ;
- Huerta-Cepas, Jaime