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Frank Laboratory for Neutron Physics, Joint Institute for Nuclear Research, Dubna, Russia

Current S-Index

4.9

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.2

Average Dataset Index per dataset

Total Datasets

4

Total datasets in this organization

Average FAIR Score

76.0%

Average FAIR Score per dataset

Total Citations

4

Total citations to the organization's datasets

Total Mentions

0

Total mentions of the organization's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

F-Type ATP synthase rotor ring stoichiometry predictions

Stoichiometry prediction data for:1) rotor rings with experimental structures available2) representative c subunits3) c subunits with unexpectedly high predicted stoichiometry4) all c subunits via matching with corresponding representative sequence

Authors

  • Osipov, Stepan ;
  • Zinovev, Egor ;
  • Anuchina, Arina ;
  • Kuzmin, Alexander ;
  • Minaeva, Andronika ;
  • Ryzhykau, Yury ;
  • Vlasov, Alexey ;
  • Gushchin, Ivan
0 Citations0 Mentions79% FAIR0.1 Dataset Index
10.5281/zenodo.125449862024

F-Type ATP synthase rotor ring stoichiometry predictions

Stoichiometry prediction data for:1) rotor rings with experimental structures available2) representative c subunits3) c subunits with unexpectedly high predicted stoichiometry4) all c subunits via matching with corresponding representative sequence

Authors

  • Osipov, Stepan ;
  • Zinovev, Egor ;
  • Anuchina, Arina ;
  • Kuzmin, Alexander ;
  • Minaeva, Andronika ;
  • Ryzhykau, Yury ;
  • Vlasov, Alexey ;
  • Gushchin, Ivan
0 Citations0 Mentions79% FAIR0.1 Dataset Index
10.5281/zenodo.125449852024

All-atom molecular dynamics simulations of incomplete ATP synthase rotor rings with unusually high stoichiometry predicted by the AlphaFold2-based method (Version: CHARMM36m, GROMACS 2022)

The trajectories of all-atom MD simulations of AlphaFold2 4, 11, 16 or 18-mer structures of the subunit c fromCandidatus Kryptonium thompsoni (CKt_Nmer_lipid_mix_CHM36m_303K_500ns) and Thalassoglobus polymorphus (Tp_Nmer_lipid_mix_CHM36m_303K_500ns), and AlphaFold2 11-mer structure of the subunit c from Spinacia oleracea (So_11mer-c20_POPC_CHM36m_303K_300ns) in a lipid bilayer.Simulations have been performed using the CHARMM36m force field, running with the GROMACS 2022 package.

Authors

  • Osipov, Stepan ;
  • Zinovev, Egor ;
  • Anuchina, Arina ;
  • Kuzmin, Alexander ;
  • Minaeva, Andronika ;
  • Ryzhykau, Yury ;
  • Vlasov, Alexey ;
  • Gushchin, Ivan
2 Citations0 Mentions73% FAIR2.3 Dataset Index
10.5281/zenodo.106703152024

All-atom molecular dynamics simulations of incomplete ATP synthase rotor rings with unusually high stoichiometry predicted by the AlphaFold2-based method (Version: CHARMM36m, GROMACS 2022)

The trajectories of all-atom MD simulations of AlphaFold2 4, 11, 16 or 18-mer structures of the subunit c fromCandidatus Kryptonium thompsoni (CKt_Nmer_lipid_mix_CHM36m_303K_500ns) and Thalassoglobus polymorphus (Tp_Nmer_lipid_mix_CHM36m_303K_500ns), and AlphaFold2 11-mer structure of the subunit c from Spinacia oleracea (So_11mer-c20_POPC_CHM36m_303K_300ns) in a lipid bilayer.Simulations have been performed using the CHARMM36m force field, running with the GROMACS 2022 package.

Authors

  • Osipov, Stepan ;
  • Zinovev, Egor ;
  • Anuchina, Arina ;
  • Kuzmin, Alexander ;
  • Minaeva, Andronika ;
  • Ryzhykau, Yury ;
  • Vlasov, Alexey ;
  • Gushchin, Ivan
2 Citations0 Mentions73% FAIR2.3 Dataset Index
10.5281/zenodo.106703162024