Automated Organization ProfileFruit and Vegetable Research Institute (FAVRI)
Fruit and Vegetable Research Institute (FAVRI)
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets in this organization
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the organization's datasets
Total Mentions
Total mentions of the organization's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 0.2 (sum of 1 dataset Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
Unraveling the genetic diversity held in genebanks on a large scale is underway, due to advances in Next-generation sequence (NGS) based technologies that produce high-density genetic markers for a large number of samples at low cost. Genebank users should be in a position to identify and select germplasm from the global genepool based on a combination of passport, genotypic and phenotypic data. To facilitate this, a new generation of information systems is being designed to efficiently handle data and link it with other external resources such as genome or breeding databases. The Musa Germplasm Information System (MGIS), the database for global ex situ-held banana genetic resources, has been developed to address those needs in a user-friendly way. In developing MGIS, we selected a generic database schema (Chado), the robust content management system Drupal for the user interface, and Tripal, a set of Drupal modules which links the Chado schema to Drupal. MGIS allows germplasm collection examination, accession browsing, advanced search functions, and germplasm orders. Additionally, we developed unique graphical interfaces to compare accessions and to explore them based on their taxonomic information. Accession-based data has been enriched with publications, genotyping studies and associated genotyping datasets reporting on germplasm use. Finally, an interoperability layer has been implemented to facilitate the link with complementary databases like the Banana Genome Hub and the MusaBase breeding database.
Authors
- Ruas, M. ;
- Guignon, V. ;
- Guilhem, S. ;
- Sardos, J. ;
- Chase, R. ;
- Hueber, Y. ;
- Andrieu, A. ;
- Hazekamp, T. ;
- Irish, B. ;
- Jelali, K. ;
- Adeka, J. ;
- Ayala-Silva, T. ;
- Chao, C.P. ;
- Daniells, J. ;
- Dowiya, B. ;
- Effa effa, B. ;
- Gueco, L. ;
- Herradura, L. ;
- Ibobondji., L. ;
- Kempenaers, E. ;
- Kilangi, J. ;
- Muhangi, S. ;
- Ngo Xuan, P. ;
- Paofa, J. ;
- Pavis, C. ;
- Thiemele, D. ;
- Tossou, C. ;
- Sandoval, J. ;
- Sutanto, A. ;
- Vangu Paka, G. ;
- Yi, G. ;
- van den Houwe, I. ;
- Roux, N. ;
- Rouard, M.