Automated Organization Profile

Department of Physics, Harvard University, Cambridge, MA 02138, USA

Current S-Index

11.2

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.9

Average Dataset Index per dataset

Total Datasets

6

Total datasets in this organization

Average FAIR Score

74.0%

Average FAIR Score per dataset

Total Citations

4

Total citations to the organization's datasets

Total Mentions

0

Total mentions of the organization's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt

Atomistic modeling of chemically reactive systems has so far relied on either expensive ab initio methods or bond-order force fields requiring arduous parametrization. Here, we describe a Bayesian active learning framework for autonomous ``on-the-fly'' training of fast and accurate reactive many-body force fields during molecular dynamics simulations. At each time step, predictive uncertainties of a sparse Gaussian process are evaluated to automatically determine whether additional ab initio training data are needed. We introduce a general method for mapping trained kernel models onto equivalent polynomial models whose prediction cost is much lower and independent of the training set size. As a demonstration, we perform direct two-phase simulations of heterogeneous H2 turnover on the Pt(111) catalyst surface at chemical accuracy. The model trains itself in three days and performs at twice the speed of a ReaxFF model, while maintaining much higher fidelity to DFT and excellent agreement with experiment.

Authors

  • Vandermause, Jonathan ;
  • Xie, Yu ;
  • Lim, Jin Soo ;
  • Owen, Cameron ;
  • Kozinsky, Boris
0 Citations0 Mentions88% FAIR1.9 Dataset Index
10.24435/materialscloud:r0-84July 2022

Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt

Atomistic modeling of chemically reactive systems has so far relied on either expensive ab initio methods or bond-order force fields requiring arduous parametrization. Here, we describe a Bayesian active learning framework for autonomous ``on-the-fly'' training of fast and accurate reactive many-body force fields during molecular dynamics simulations. At each time step, predictive uncertainties of a sparse Gaussian process are evaluated to automatically determine whether additional ab initio training data are needed. We introduce a general method for mapping trained kernel models onto equivalent polynomial models whose prediction cost is much lower and independent of the training set size. As a demonstration, we perform direct two-phase simulations of heterogeneous H2 turnover on the Pt(111) catalyst surface at chemical accuracy. The model trains itself in three days and performs at twice the speed of a ReaxFF model, while maintaining much higher fidelity to DFT and excellent agreement with experiment.

Authors

  • Vandermause, Jonathan ;
  • Xie, Yu ;
  • Lim, Jin Soo ;
  • Owen, Cameron ;
  • Kozinsky, Boris
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.24435/materialscloud:g0-64July 2022

Non-Abelian reciprocal braiding of Weyl points and its manifestation in ZrTe

Weyl semimetals in three-dimensional crystals provide the paradigm example of topologically protected band nodes. It is usually taken for granted that a pair of colliding Weyl points annihilate whenever they carry opposite chiral charges. In stark contrast, here we report that Weyl points in systems symmetric under the composition of time-reversal with a π-rotation are characterized by a non-Abelian topological invariant. The topological charges of the Weyl points are transformed via braid phase factors which arise upon exchange inside symmetric planes of the reciprocal momentum space. We elucidate this process with an elementary two-dimensional tight-binding model implementable in cold-atoms setups and in photonic systems. In three dimensions, interplay of the non-Abelian topology with point-group symmetry is shown to enable topological phase transitions in which pairs of Weyl points may scatter or convert into nodal-line rings. By combining our theoretical arguments with first-principles calculations, we predict that Weyl points occurring near the Fermi level of zirconium telluride (ZrTe) carry non-trivial values of the non-Abelian charge, and that uniaxial compression strain drives a non-trivial conversion of the Weyl points into nodal lines.

Authors

  • Bouhon, Adrien ;
  • Wu, QuanSheng ;
  • Slager, Robert-Jan ;
  • Weng, Hongming ;
  • Yazyev, Oleg V. ;
  • Bzdušek, Tomáš
1 Citation0 Mentions88% FAIR2.3 Dataset Index
10.24435/materialscloud:vb-mkJune 2020

Non-Abelian reciprocal braiding of Weyl points and its manifestation in ZrTe

Weyl semimetals in three-dimensional crystals provide the paradigm example of topologically protected band nodes. It is usually taken for granted that a pair of colliding Weyl points annihilate whenever they carry opposite chiral charges. In stark contrast, here we report that Weyl points in systems symmetric under the composition of time-reversal with a π-rotation are characterized by a non-Abelian topological invariant. The topological charges of the Weyl points are transformed via braid phase factors which arise upon exchange inside symmetric planes of the reciprocal momentum space. We elucidate this process with an elementary two-dimensional tight-binding model implementable in cold-atoms setups and in photonic systems. In three dimensions, interplay of the non-Abelian topology with point-group symmetry is shown to enable topological phase transitions in which pairs of Weyl points may scatter or convert into nodal-line rings. By combining our theoretical arguments with first-principles calculations, we predict that Weyl points occurring near the Fermi level of zirconium telluride (ZrTe) carry non-trivial values of the non-Abelian charge, and that uniaxial compression strain drives a non-trivial conversion of the Weyl points into nodal lines.

Authors

  • Bouhon, Adrien ;
  • Wu, QuanSheng ;
  • Slager, Robert-Jan ;
  • Weng, Hongming ;
  • Yazyev, Oleg V. ;
  • Bzdušek, Tomáš
1 Citation0 Mentions77% FAIR2.2 Dataset Index
10.24435/materialscloud:66-ddJune 2020

On-the-Fly Active Learning of Interpretable Bayesian Force Fields for Atomistic Rare Events

Machine learned force fields typically require manual construction of training sets consisting of thousands of first principles calculations, which can result in low training efficiency and unpredictable errors when applied to structures not represented in the training set of the model. This severely limits the practical application of these models in systems with dynamics governed by important rare events, such as chemical reactions and diffusion. We present an adaptive Bayesian inference method for automating the training of interpretable, low-dimensional, and multi-element interatomic force fields using structures drawn on the fly from molecular dynamics simulations. Within an active learning framework, the internal uncertainty of a Gaussian process regression model is used to decide whether to accept the model prediction or to perform a first principles calculation to augment the training set of the model. The method is applied to a range of single- and multi-element systems and shown to achieve a favorable balance of accuracy and computational efficiency, while requiring a minimal amount of ab initio training data. We provide a fully open-source implementation of our method, as well as a procedure to map trained models to computationally efficient tabulated force fields.

Authors

  • Vandermause, Jonathan ;
  • Torrisi, Steven B. ;
  • Batzner, Simon ;
  • Xie, Yu ;
  • Sun, Lixin ;
  • Kolpak, Alexie M. ;
  • Kozinsky, Boris
1 Citation0 Mentions88% FAIR2.3 Dataset Index
10.24435/materialscloud:2020.0017/v1January 2020

On-the-Fly Active Learning of Interpretable Bayesian Force Fields for Atomistic Rare Events

Machine learned force fields typically require manual construction of training sets consisting of thousands of first principles calculations, which can result in low training efficiency and unpredictable errors when applied to structures not represented in the training set of the model. This severely limits the practical application of these models in systems with dynamics governed by important rare events, such as chemical reactions and diffusion. We present an adaptive Bayesian inference method for automating the training of interpretable, low-dimensional, and multi-element interatomic force fields using structures drawn on the fly from molecular dynamics simulations. Within an active learning framework, the internal uncertainty of a Gaussian process regression model is used to decide whether to accept the model prediction or to perform a first principles calculation to augment the training set of the model. The method is applied to a range of single- and multi-element systems and shown to achieve a favorable balance of accuracy and computational efficiency, while requiring a minimal amount of ab initio training data. We provide a fully open-source implementation of our method, as well as a procedure to map trained models to computationally efficient tabulated force fields.

Authors

  • Vandermause, Jonathan ;
  • Torrisi, Steven B. ;
  • Batzner, Simon ;
  • Xie, Yu ;
  • Sun, Lixin ;
  • Kolpak, Alexie M. ;
  • Kozinsky, Boris
1 Citation0 Mentions88% FAIR2.3 Dataset Index
10.24435/materialscloud:a1-raJanuary 2020