Automated Organization Profile

SAS Institute (United States)

Current S-Index

17.3

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.5

Average Dataset Index per dataset

Total Datasets

35

Total datasets in this organization

Average FAIR Score

28.2%

Average FAIR Score per dataset

Total Citations

6

Total citations to the organization's datasets

Total Mentions

0

Total mentions of the organization's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Additional file 2 of Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response

Additional file 2: Table 01. List of 2,893 differentially expressed genes identified in whole root data. Table 02. List of 2,739 differentially expressed genes identified using epidermis specific RNA-seq data with controls at all time points. Fields included are AGI, Alias(es), Cluster number, and a flag indicating whether the gene was differentially expressed at 6, 12, 18, 24, 30 or 36 hours. Table 03. List of 337 motifs identified using AME (65) with the DAP-seq (66) database. Table 04. List of 29 Consistent transcription factors identified in 20 runs of logistic regression with LASSO. Name, AGI and GO terms identified on arabidopsis.org (TAIR) are provided. Table 05. List of putative targets associated with each of the 29 consistent transcription factors. List includes the name of transcription factor, AGI of target, flag indicating whether target is 1) a known iron gene and/or 2) a transcription factor. Table 06. GO terms enriched in the group of targets associated with each of 29 consistent transcription factors. Table 07. Subset of GO terms from Supplementary Table 03 that include reference to "iron". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided. Table 08. Subset of GO terms from Supplementary Table 03 that include reference to "root". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided. Table 09. Subset of GO terms from Supplementary Table 03 that include reference to "epidermis". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided.

Authors

  • Schmittling, Selene R. ;
  • Muhammad, DurreShahwar ;
  • Haque, Samiul ;
  • Long, Terri A. ;
  • Williams, Cranos M.
0 Citations0 Mentions85% FAIR0.9 Dataset Index
10.6084/m9.figshare.24355119.v1January 2024

Additional file 2 of Cellular clarity: a logistic regression approach to identify root epidermal regulators of iron deficiency response

Additional file 2: Table 01. List of 2,893 differentially expressed genes identified in whole root data. Table 02. List of 2,739 differentially expressed genes identified using epidermis specific RNA-seq data with controls at all time points. Fields included are AGI, Alias(es), Cluster number, and a flag indicating whether the gene was differentially expressed at 6, 12, 18, 24, 30 or 36 hours. Table 03. List of 337 motifs identified using AME (65) with the DAP-seq (66) database. Table 04. List of 29 Consistent transcription factors identified in 20 runs of logistic regression with LASSO. Name, AGI and GO terms identified on arabidopsis.org (TAIR) are provided. Table 05. List of putative targets associated with each of the 29 consistent transcription factors. List includes the name of transcription factor, AGI of target, flag indicating whether target is 1) a known iron gene and/or 2) a transcription factor. Table 06. GO terms enriched in the group of targets associated with each of 29 consistent transcription factors. Table 07. Subset of GO terms from Supplementary Table 03 that include reference to "iron". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided. Table 08. Subset of GO terms from Supplementary Table 03 that include reference to "root". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided. Table 09. Subset of GO terms from Supplementary Table 03 that include reference to "epidermis". GO ID, GO term, adjusted p-value and transcription factor name or AGI provided.

Authors

  • Schmittling, Selene R. ;
  • Muhammad, DurreShahwar ;
  • Haque, Samiul ;
  • Long, Terri A. ;
  • Williams, Cranos M.
0 Citations0 Mentions85% FAIR0.9 Dataset Index
10.6084/m9.figshare.24355119January 2024

Supplemental Material - Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine)

Supplemental Material for Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Desmond I. Bannon, Wenjun Bao, James F. Dillman, Russ Wolfinger, Christopher S. Phillips, and Edward J. Perkins in International Journal of Toxicology

Authors

  • Bannon, Desmond I. ;
  • Bao, Wenjun ;
  • Dillman, James F. ;
  • Wolfinger, Russ ;
  • Phillips, Christopher S. ;
  • Perkins, Edward J.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.25384/sage.22309866January 2023

Supplemental Material - Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine)

Supplemental Material for Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Desmond I. Bannon, Wenjun Bao, James F. Dillman, Russ Wolfinger, Christopher S. Phillips, and Edward J. Perkins in International Journal of Toxicology

Authors

  • Bannon, Desmond I. ;
  • Bao, Wenjun ;
  • Dillman, James F. ;
  • Wolfinger, Russ ;
  • Phillips, Christopher S. ;
  • Perkins, Edward J.
0 Citations0 Mentions56% FAIR0.6 Dataset Index
10.25384/sage.22309866.v1January 2023

Supplemental Material - Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine)

Supplemental Material for Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Desmond I. Bannon, Wenjun Bao, James F. Dillman, Russ Wolfinger, Christopher S. Phillips, and Edward J. Perkins in International Journal of Toxicology

Authors

  • Bannon, Desmond I. ;
  • Bao, Wenjun ;
  • Dillman, James F. ;
  • Wolfinger, Russ ;
  • Phillips, Christopher S. ;
  • Perkins, Edward J.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.25384/sage.22309869January 2023

Supplemental Material - Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine)

Supplemental Material for Gene Expression and Pathway Analysis in Rat Brain and Liver After Exposure to Royal Demolition Explosive (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Desmond I. Bannon, Wenjun Bao, James F. Dillman, Russ Wolfinger, Christopher S. Phillips, and Edward J. Perkins in International Journal of Toxicology

Authors

  • Bannon, Desmond I. ;
  • Bao, Wenjun ;
  • Dillman, James F. ;
  • Wolfinger, Russ ;
  • Phillips, Christopher S. ;
  • Perkins, Edward J.
0 Citations0 Mentions56% FAIR0.6 Dataset Index
10.25384/sage.22309869.v1January 2023

Additional file 12 of Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

Additional file 12: Table S11. Summary of technical reproducibility.

Authors

  • Pan, Bohu ;
  • Ren, Luyao ;
  • Onuchic, Vitor ;
  • Guan, Meijian ;
  • Kusko, Rebecca ;
  • Bruinsma, Steve ;
  • Trigg, Len ;
  • Scherer, Andreas ;
  • Ning, Baitang ;
  • Zhang, Chaoyang ;
  • Glidewell-Kenney, Christine ;
  • Xiao, Chunlin ;
  • Donaldson, Eric ;
  • Sedlazeck, Fritz J. ;
  • Schroth, Gary ;
  • Yavas, Gokhan ;
  • Grunenwald, Haiying ;
  • Chen, Haodong ;
  • Meinholz, Heather ;
  • Meehan, Joe ;
  • Wang, Jing ;
  • Yang, Jingcheng ;
  • Foox, Jonathan ;
  • Shang, Jun ;
  • Miclaus, Kelci ;
  • Dong, Lianhua ;
  • Shi, Leming ;
  • Mohiyuddin, Marghoob ;
  • Pirooznia, Mehdi ;
  • Gong, Ping ;
  • Golshani, Rooz ;
  • Wolfinger, Russ ;
  • Lababidi, Samir ;
  • Sahraeian, Sayed Mohammad Ebrahim ;
  • Sherry, Steve ;
  • Han, Tao ;
  • Chen, Tao ;
  • Shi, Tieliu ;
  • Hou, Wanwan ;
  • Ge, Weigong ;
  • Zou, Wen ;
  • Guo, Wenjing ;
  • Bao, Wenjun ;
  • Xiao, Wenzhong ;
  • Fan, Xiaohui ;
  • Gondo, Yoichi ;
  • Yu, Ying ;
  • Zhao, Yongmei ;
  • Su, Zhenqiang ;
  • Liu, Zhichao ;
  • Tong, Weida ;
  • Xiao, Wenming ;
  • Zook, Justin M. ;
  • Zheng, Yuanting ;
  • Hong, Huixiao
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.17798270.v1January 2022

Additional file 13 of Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

Additional file 13: Table S12. Summary of lab reproducibility.

Authors

  • Pan, Bohu ;
  • Ren, Luyao ;
  • Onuchic, Vitor ;
  • Guan, Meijian ;
  • Kusko, Rebecca ;
  • Bruinsma, Steve ;
  • Trigg, Len ;
  • Scherer, Andreas ;
  • Ning, Baitang ;
  • Zhang, Chaoyang ;
  • Glidewell-Kenney, Christine ;
  • Xiao, Chunlin ;
  • Donaldson, Eric ;
  • Sedlazeck, Fritz J. ;
  • Schroth, Gary ;
  • Yavas, Gokhan ;
  • Grunenwald, Haiying ;
  • Chen, Haodong ;
  • Meinholz, Heather ;
  • Meehan, Joe ;
  • Wang, Jing ;
  • Yang, Jingcheng ;
  • Foox, Jonathan ;
  • Shang, Jun ;
  • Miclaus, Kelci ;
  • Dong, Lianhua ;
  • Shi, Leming ;
  • Mohiyuddin, Marghoob ;
  • Pirooznia, Mehdi ;
  • Gong, Ping ;
  • Golshani, Rooz ;
  • Wolfinger, Russ ;
  • Lababidi, Samir ;
  • Sahraeian, Sayed Mohammad Ebrahim ;
  • Sherry, Steve ;
  • Han, Tao ;
  • Chen, Tao ;
  • Shi, Tieliu ;
  • Hou, Wanwan ;
  • Ge, Weigong ;
  • Zou, Wen ;
  • Guo, Wenjing ;
  • Bao, Wenjun ;
  • Xiao, Wenzhong ;
  • Fan, Xiaohui ;
  • Gondo, Yoichi ;
  • Yu, Ying ;
  • Zhao, Yongmei ;
  • Su, Zhenqiang ;
  • Liu, Zhichao ;
  • Tong, Weida ;
  • Xiao, Wenming ;
  • Zook, Justin M. ;
  • Zheng, Yuanting ;
  • Hong, Huixiao
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.17798276January 2022

Additional file 13 of Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

Additional file 13: Table S12. Summary of lab reproducibility.

Authors

  • Pan, Bohu ;
  • Ren, Luyao ;
  • Onuchic, Vitor ;
  • Guan, Meijian ;
  • Kusko, Rebecca ;
  • Bruinsma, Steve ;
  • Trigg, Len ;
  • Scherer, Andreas ;
  • Ning, Baitang ;
  • Zhang, Chaoyang ;
  • Glidewell-Kenney, Christine ;
  • Xiao, Chunlin ;
  • Donaldson, Eric ;
  • Sedlazeck, Fritz J. ;
  • Schroth, Gary ;
  • Yavas, Gokhan ;
  • Grunenwald, Haiying ;
  • Chen, Haodong ;
  • Meinholz, Heather ;
  • Meehan, Joe ;
  • Wang, Jing ;
  • Yang, Jingcheng ;
  • Foox, Jonathan ;
  • Shang, Jun ;
  • Miclaus, Kelci ;
  • Dong, Lianhua ;
  • Shi, Leming ;
  • Mohiyuddin, Marghoob ;
  • Pirooznia, Mehdi ;
  • Gong, Ping ;
  • Golshani, Rooz ;
  • Wolfinger, Russ ;
  • Lababidi, Samir ;
  • Sahraeian, Sayed Mohammad Ebrahim ;
  • Sherry, Steve ;
  • Han, Tao ;
  • Chen, Tao ;
  • Shi, Tieliu ;
  • Hou, Wanwan ;
  • Ge, Weigong ;
  • Zou, Wen ;
  • Guo, Wenjing ;
  • Bao, Wenjun ;
  • Xiao, Wenzhong ;
  • Fan, Xiaohui ;
  • Gondo, Yoichi ;
  • Yu, Ying ;
  • Zhao, Yongmei ;
  • Su, Zhenqiang ;
  • Liu, Zhichao ;
  • Tong, Weida ;
  • Xiao, Wenming ;
  • Zook, Justin M. ;
  • Zheng, Yuanting ;
  • Hong, Huixiao
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.17798276.v1January 2022

Additional file 14 of Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

Additional file 14: Table S13. Summary of aligner reproducibility

Authors

  • Pan, Bohu ;
  • Ren, Luyao ;
  • Onuchic, Vitor ;
  • Guan, Meijian ;
  • Kusko, Rebecca ;
  • Bruinsma, Steve ;
  • Trigg, Len ;
  • Scherer, Andreas ;
  • Ning, Baitang ;
  • Zhang, Chaoyang ;
  • Glidewell-Kenney, Christine ;
  • Xiao, Chunlin ;
  • Donaldson, Eric ;
  • Sedlazeck, Fritz J. ;
  • Schroth, Gary ;
  • Yavas, Gokhan ;
  • Grunenwald, Haiying ;
  • Chen, Haodong ;
  • Meinholz, Heather ;
  • Meehan, Joe ;
  • Wang, Jing ;
  • Yang, Jingcheng ;
  • Foox, Jonathan ;
  • Shang, Jun ;
  • Miclaus, Kelci ;
  • Dong, Lianhua ;
  • Shi, Leming ;
  • Mohiyuddin, Marghoob ;
  • Pirooznia, Mehdi ;
  • Gong, Ping ;
  • Golshani, Rooz ;
  • Wolfinger, Russ ;
  • Lababidi, Samir ;
  • Sahraeian, Sayed Mohammad Ebrahim ;
  • Sherry, Steve ;
  • Han, Tao ;
  • Chen, Tao ;
  • Shi, Tieliu ;
  • Hou, Wanwan ;
  • Ge, Weigong ;
  • Zou, Wen ;
  • Guo, Wenjing ;
  • Bao, Wenjun ;
  • Xiao, Wenzhong ;
  • Fan, Xiaohui ;
  • Gondo, Yoichi ;
  • Yu, Ying ;
  • Zhao, Yongmei ;
  • Su, Zhenqiang ;
  • Liu, Zhichao ;
  • Tong, Weida ;
  • Xiao, Wenming ;
  • Zook, Justin M. ;
  • Zheng, Yuanting ;
  • Hong, Huixiao
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.17798279January 2022