Automated Organization Profile

Institute of Biomedicine, Department of Microbiology and Immunology, University of Gothenburg

Current S-Index

39.3

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.8

Average Dataset Index per dataset

Total Datasets

22

Total datasets in this organization

Average FAIR Score

96.2%

Average FAIR Score per dataset

Total Citations

51

Total citations to the organization's datasets

Total Mentions

0

Total mentions of the organization's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - The misfolding protein marker gus1-3-GFP and the metacaspase Mca1-GFP during mid-exponential growth in yeast Hsp70-mutant yeast strains (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of live yeast cells at mid-exponential growth. All strains produce the aggregate marker protein gus1-3-GFP or the metacaspase Mca1 tagged with GFP (Mca1-GFP)The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Hanzén, Sarah ;
  • Vielfort, Katarina ;
  • Andersson, Rebecca ;
  • Nyström, Thomas
2 Citations0 Mentions96% FAIR1.3 Dataset Index
10.5878/j9zv-0y672020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - Immunocytofluoroscense of Hsp70-mutant yeast strains with primary antibodies against Hsp42p (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of fixated yeast cells at mid-exponential growth. The samples have been stained with antibodies against Hsp42 (primary antibody: rabbit anti Hsp42, secondary antibody: goat anti rabbit Alexa Flour488) and counterstained with DAPI (datasets from 170505 and 170608) and antibodies against Actin (primary antibody: mouse anti- Act1, secondary antibody: goat anti mouse Alexa Flour 568) (dataset from 170518) or nucleoporin complexes (dataset from 170608) (primary antibody: mouse anti- Nsp1, secondary antibody: goat anti mouse Alexa Flour 568).The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Vielfort, Katarina ;
  • Andersson, Rebecca ;
  • Nyström, Thomas
3 Citations0 Mentions96% FAIR1.7 Dataset Index
10.5878/a3kq-67082020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - The misfolding protein marker gus1-3-GFP and the metacaspase Mca1-GFP during mid-exponential growth in yeast Hsp70-mutant yeast strains (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of live yeast cells at mid-exponential growth. All strains produce the aggregate marker protein gus1-3-GFP or the metacaspase Mca1 tagged with GFP (Mca1-GFP)The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Hanzén, Sarah ;
  • Vielfort, Katarina ;
  • Andersson, Rebecca ;
  • Nyström, Thomas
3 Citations0 Mentions96% FAIR1.7 Dataset Index
10.5878/8wxm-8r382020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - The molecular chaperone GFP-Hsp104 before and after heat stress in Hsp70-mutant yeast strains (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of live yeast cells at mid-exponential growth and after 30 minutes of heat shock. The cells were grown in complete synthetic media lacking histidine (CSM-HIS) with 2 % galactose as carbon source. All strains carry a plasmid expressing GFP-HSP104 under the control of the GAL-promoter.The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Hanzén, Sarah ;
  • Andersson, Rebecca ;
  • Nyström, Thomas
3 Citations0 Mentions96% FAIR1.7 Dataset Index
10.5878/gv2g-xc302020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - Western blots of SDS-PAGE gels with primary antibodies against Hsp70p and Pgk1p (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.WT ssa12DD and ssa12DDSSA4OE: Western blots of SDS-PAGE gels with protein extracts from yeast in mid-exponential growth. The yeast was grown in complete synthetic media with 2 % glucose as carbon source. WT ssa12DD w chimaera plasmids: Western blots of SDS-PAGE gels with protein extracts from yeast in mid-exponential growth before and after 30 minutes of heat shock. The yeast was grown in complete synthetic media lacking leucine with 2 % glucose as carbon source. The images are scans of western blot PVDF-membranes.The image files are provided in TIFF format.

Authors

  • Andersson, Rebecca ;
  • Nyström, Thomas
3 Citations0 Mentions96% FAIR1.7 Dataset Index
10.5878/rq33-3f442020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - Intracellular colocalisation of the chaperone Ssa4-GFP and the metacaspase Mca1-RFP before and after heat stress in a Hsp70-mutant yeast cell strain (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of live yeast cells at mid-exponential growth before and after 30 minutes of heat shock. All strains produce the Hsp70 chaperone protein Ssa4 tagged with GFP (Ssa4-GFP) and the metacaspase Mca1 tagged with RFP (Mca1-RFP).The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Vielfort, Katarina ;
  • Andersson, Rebecca ;
  • Nyström, Thomas
3 Citations0 Mentions96% FAIR1.7 Dataset Index
10.5878/hvf7-3j182020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - Hsp70-mutant yeast strains with the misfolding marker protein guk1-7-GFP and with or without an intact HSP104-allele, imaged during mid-exponential growth (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of live yeast cells at mid-exponential growth. The yeast is grown in complete synthetic medium with 2 % glucose as carbon source. All strains produce the aggregate marker protein guk1-7-GFP.The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Vielfort, Katarina ;
  • Andersson, Rebecca ;
  • Nyström, Thomas
2 Citations0 Mentions96% FAIR1.3 Dataset Index
10.5878/d0ya-5n212020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - Hsp70-mutant yeast cells with the misfolding marker protein guk1-7-GFP, the nucleolar marker Sik1-RFP and nuclear staining with DAPI imaged before, directly after, and during recovery from heat stress (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of live yeast cells at mid-exponential growth before stress, directly after 30 minutes of heat shock and 40 minutes after heat shock. The yeast is grown in complete synthetic medium lacking uracil with 2 % glucose as carbon source. All strains produce the aggregate marker protein guk1-7-GFP and carry a plasmid expressing SIK1-RFP under the control of the GPD-promoter.The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Andersson, Rebecca ;
  • Nyström, Thomas
2 Citations0 Mentions96% FAIR1.3 Dataset Index
10.5878/3cxh-63672020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - The molecular chaperone GFP-Hsp104 before and after heat stress in a Hsp70-mutant yeast strain with exogenous complementation of wildtype and chimaeric mutant alleles of yeast Hsp70-alleles (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Fluorescence microscopy of live yeast cells at mid-exponential growth and after 30 minutes of heat shock. The cells were grown in complete synthetic media lacking histidine and leucine with 2 % galactose as carbon source. All strains carry two plasmids; one expressing GFP-HSP104 under the control of the GAL-promoter and one expressing SSA1, SSA4 or SSA1/SSA4 chimaeras (alternatively an empty plasmid) under the control of the GPD-promoter.The dataset was collected through fluorescence microscopy.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Andersson, Rebecca ;
  • Hanzén, Sarah ;
  • Vielfort, Katarina ;
  • Nyström, Thomas
2 Citations0 Mentions96% FAIR1.3 Dataset Index
10.5878/mez1-3z302020

Study of the yeast cytosolic Hsp70-system in protein homeostasis and life span regulation - Timelapse microscopy of the misfolding protein guk1-7-GFP in recovery after heat stress in Hsp70- and Hsp104-mutant yeast strains (Version: 1)

Our study aims to answer the question "Which functions of the Hsp70 class of molecular chaperones are essential for yeast to maintain a standard replicative life span?". To answer this question, we utilised the disparate functions of the Hsp70's Ssa1 and 2 and their paralog Ssa4 in a yeast strain that lacks Ssa1/2 but has an ectopically increased production of Ssa4. We have gathered data on the behaviour of several different markers for protein aggregation under different circumstances, as well as data on proteins from other classes of molecular chaperones. The bulk of the data is in the form of multichannel microscopy images from widefield microscopy, with a few sets of western blots of protein extracts.Timelapse microscopy of yeast cells during recovery after 30 minutes of heat shock. The yeast was cultivated in complete synthetic media with 2 % glucose as carbon source. All strains produce the misfolding protein guk1-7-GFP.The dataset was collected through timelapse microscopy of the same yeast cells for 2 hours.The image files are provided in Carl Zeiss Image format (.czi).

Authors

  • Hanzén, Sarah ;
  • Andersson, Rebecca ;
  • Nyström, Thomas
2 Citations0 Mentions96% FAIR1.3 Dataset Index
10.5878/wj4m-y9252020