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Automated Organization Profile

The Jackson Laboratory, Bar Harbor, ME 04609, USA

Current S-Index

2.1

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.1

Average Dataset Index per dataset

Total Datasets

2

Total datasets in this organization

Average FAIR Score

76.0%

Average FAIR Score per dataset

Total Citations

0

Total citations to the organization's datasets

Total Mentions

0

Total mentions of the organization's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

GAMinG script (python) and sequence file (.dat) to prepare files to run molecular dynamics in GROMACS (see ndb.rice.edu for more info regarding how to run the simulations). Two .hic maps and two sample trajectory files for high and low lengthwise compaction (binary format, see ndb.rice.edu for the conversion of .cndb to other formats) corresponding to fig 4 in the main text. There are also two aggregate chromosome analysis (ACA) hic maps corresponding to lower (CAPH2) and higher (WT) compaction.

Authors

  • Hoencamp, Claire ;
  • Dudchenko, Olga ;
  • Elbatsh, Ahmed M.O. ;
  • Brahmachari, Sumitabha ;
  • Raaijmakers, Jonne A. ;
  • Schaik, Tom van ;
  • Cacciatore, Ángela Sedeño ;
  • Contessoto, Vinicius ;
  • Heesbeen, Roy G.H.P. van ;
  • Broek, Bram van den ;
  • Mhaskar, Aditya N. ;
  • Teunissen, Hans ;
  • Hilaire, Brian Glenn St ;
  • Weisz, David ;
  • Omer, Arina D. ;
  • Pham, Melanie ;
  • Colaric, Zane ;
  • Yang, Zhenzhen ;
  • Rao, Suhas S.P. ;
  • Mitra, Namita ;
  • Lui, Christopher ;
  • Yao, Weijie ;
  • Khan, Ruqayya ;
  • Moroz, Leonid L. ;
  • Kohn, Andrea ;
  • Leger, Judy St. ;
  • Mena, Alexandria ;
  • Holcroft, Karen ;
  • Gambetta, Maria Cristina ;
  • Lim, Fabian ;
  • Farley, Emma ;
  • Stein, Nils ;
  • Haddad, Alexander ;
  • Chauss, Daniel ;
  • Mutlu, Ayse Sena ;
  • Wang, Meng C. ;
  • Young, Neil D. ;
  • Hildebrandt, Evin ;
  • Cheng, Hans H. ;
  • Knight, Christopher J. ;
  • Burnham, Theresa L.U. ;
  • Hovel, Kevin A. ;
  • Beel, Andrew J. ;
  • Mattei, Pierre-Jean ;
  • Kornberg, Roger D. ;
  • Warren, Wesley C. ;
  • Cary, Gregory ;
  • Gómez-Skarmeta, José Luis ;
  • Hinman, Veronica ;
  • Maeshima, Kazuhiro ;
  • Multani, Asha S. ;
  • Pathak, Sen ;
  • Nel-Themaat, Liesl ;
  • Behringer, Richard R. ;
  • Kaur, Parwinder ;
  • Medema, René H. ;
  • Steensel, Bas van ;
  • Wit, Elzo de ;
  • Onuchic, José N. ;
  • Pierro, Michele Di ;
  • Aiden, Erez Lieberman ;
  • Rowland, Benjamin D.
0 Citations0 Mentions73% FAIR1.8 Dataset Index
10.5281/zenodo.45823612021

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

GAMinG script (python) and sequence file (.dat) to prepare files to run molecular dynamics in GROMACS (see ndb.rice.edu for more info regarding how to run the simulations). Two .hic maps and two sample trajectory files for high and low lengthwise compaction (binary format, see ndb.rice.edu for the conversion of .cndb to other formats) corresponding to fig 4 in the main text. There are also two aggregate chromosome analysis (ACA) hic maps corresponding to lower (CAPH2) and higher (WT) compaction.

Authors

  • Mhaskar, Aditya N. ;
  • Hoencamp, Claire ;
  • Dudchenko, Olga ;
  • Elbatsh, Ahmed M.O. ;
  • Brahmachari, Sumitabha ;
  • Raaijmakers, Jonne A. ;
  • Schaik, Tom van ;
  • Cacciatore, Ángela Sedeño ;
  • Contessoto, Vinicius ;
  • Heesbeen, Roy G.H.P. van ;
  • Broek, Bram van den ;
  • Teunissen, Hans ;
  • Hilaire, Brian Glenn St ;
  • Weisz, David ;
  • Omer, Arina D. ;
  • Pham, Melanie ;
  • Colaric, Zane ;
  • Yang, Zhenzhen ;
  • Rao, Suhas S.P. ;
  • Mitra, Namita ;
  • Lui, Christopher ;
  • Yao, Weijie ;
  • Khan, Ruqayya ;
  • Moroz, Leonid L. ;
  • Kohn, Andrea ;
  • Leger, Judy St. ;
  • Mena, Alexandria ;
  • Holcroft, Karen ;
  • Gambetta, Maria Cristina ;
  • Lim, Fabian ;
  • Farley, Emma ;
  • Stein, Nils ;
  • Haddad, Alexander ;
  • Chauss, Daniel ;
  • Mutlu, Ayse Sena ;
  • Wang, Meng C. ;
  • Young, Neil D. ;
  • Hildebrandt, Evin ;
  • Cheng, Hans H. ;
  • Knight, Christopher J. ;
  • Burnham, Theresa L.U. ;
  • Hovel, Kevin A. ;
  • Beel, Andrew J. ;
  • Mattei, Pierre-Jean ;
  • Kornberg, Roger D. ;
  • Warren, Wesley C. ;
  • Cary, Gregory ;
  • Gómez-Skarmeta, José Luis ;
  • Hinman, Veronica ;
  • Maeshima, Kazuhiro ;
  • Multani, Asha S. ;
  • Pathak, Sen ;
  • Nel-Themaat, Liesl ;
  • Behringer, Richard R. ;
  • Kaur, Parwinder ;
  • Medema, René H. ;
  • Steensel, Bas van ;
  • Wit, Elzo de ;
  • Onuchic, José N. ;
  • Pierro, Michele Di ;
  • Aiden, Erez Lieberman ;
  • Rowland, Benjamin D.
0 Citations0 Mentions79% FAIR0.3 Dataset Index
10.5281/zenodo.45823602021