Automated Organization Profile

University of Zurich

Current S-Index

4,371.7

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.2

Average Dataset Index per dataset

Total Datasets

3,678

Total datasets in this organization

Average FAIR Score

64.6%

Average FAIR Score per dataset

Total Citations

2,525

Total citations to the organization's datasets

Total Mentions

16

Total mentions of the organization's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Limited datasets
Only the first 500 datasets are displayed.

Structure of biomolecular condensates

Biomolecular condensates are important organizers of cellular biochemistry. Understanding their structure and function can, for example, shed light on several neurodegenerative diseases. Although biomolecular condensates play such an important role, we barely understand their internal structure. So far, it is known that structures below the optical resolution limit are proposed to exist. These scales are accessible with X-rays, which are well suited to quantifying the organization of molecules through the structure factor. Here, we propose experiments at the BioSAXS BM29 beamline at the ESRF to further unravel the structure of biomolecular condensates. We hope that these experiments not only shed light on our own system, but also again demonstrate the power of X-rays to a growing community of condensate scientists.

Authors

  • Chowdhury, Aritra ;
  • Lorenz, Charlotta
0 Citations0 Mentions13% FAIR1.1 Dataset Index
10.15151/esrf-es-19372795762024

Sample Dataset for Single Cell Tracking

Here, we provide sample data to test scripts available at https://github.com/AltmeyerLab/ from pre-imaging (“Live pre-treatment.zip”), post-imaging (“Live post-treatment.zip”) and iterative staining (“Iterative staining.zip”). Additionally, there are .txt files which were extracted from ScanR Analysis (analysis_parameters_live.txt and analysis_parameters_iterative_staining.txt) which can be used to test the matlab scripts. Finally, there is a Tracking_fiji.xls file which is used to copy the values generated from the “Coord” table in the matlab script to import into the tracking plugin in FIJI, so that the tracks can be overlayed with the stack of the corresponding cells.

Authors

  • Panagopoulos, Andreas ;
  • Stout, Merula ;
  • Kilic, Sinan ;
  • Leary, Peter ;
  • Vornberger, Julia ;
  • Pasti, Virginia ;
  • Galarreta, Antonio ;
  • Lezaja, Aleksandra ;
  • Kirschenbühler, Kyra ;
  • Imhof, Ralph ;
  • Ziegler, Urs ;
  • Altmeyer, Matthias
0 Citations0 Mentions73% FAIR0.5 Dataset Index
10.5281/zenodo.148914602025

Sample Dataset for Single Cell Tracking

Here, we provide sample data to test scripts available at https://github.com/AltmeyerLab/ from pre-imaging (“Pre-imaging.zip”), post-imaging (“Post-imaging.zip”) and iterative staining (“Iterative staining.zip”). Additionally, there are .txt files which were extracted from ScanR Analysis (analysis_live.txt and analysis_iterative_staining.txt) which can be used to test the matlab scripts. Finally, there is a Tracking_fiji.xls file which is used to copy the values generated from the “Coord” table in the matlab script to import into the tracking plugin in FIJI, so that the tracks can be overlayed with the stack of the corresponding cells.

Authors

  • Panagopoulos, Andreas ;
  • Stout, Merula ;
  • Kilic, Sinan ;
  • Leary, Peter ;
  • Vornberger, Julia ;
  • Pasti, Virginia ;
  • Galarreta, Antonio ;
  • Lezaja, Aleksandra ;
  • Kirschenbühler, Kyra ;
  • Imhof, Ralph ;
  • Ziegler, Urs ;
  • Altmeyer, Matthias
0 Citations0 Mentions73% FAIR0.5 Dataset Index
10.5281/zenodo.147942822025

SDM Benchmark

targets.zip                    # ML-ready targets from sPlotOpen and gbif POWOpredictors.zip               # ML-ready predictors for sPlotOpen, gbif POWO, and random background points# PO gbif_thinned_powo.csv              # PO: cleaned using POWO rangesgbif_thinned_iucn.csv              # PO: cleaned using IUCN ranges# PAsplotopen.csv              # PA data from sPlotOpen# Range maps├── IUCN/│   ├── original/                      # Original IUCN range maps│   └── per_species_polygons.zip      # Filtered, species-specific polygons│├── POWO/│   ├── per_species_polygons.zip      # Filtered species range maps based on POWO│   └── (...)                        │└── WGSRPD/    ├── level1/                           ├── level2/                           └── level3/                       # Level 3 regions used by POWO

Authors

  • van Tiel, Nina ;
  • Zbinden, Robin ;
  • Arens, Emilia
0 Citations0 Mentions50% FAIR0.5 Dataset Index
10.5281/zenodo.154424732025

Hybrid glacio-hydrological modeling of historical and future runoff in Western Patagonia (Version: v1.1 (publication version))

This dataset provides historical and future runoff data for 2,236 catchments in Western Patagonia, along with static catchment attributes. It accompanies the study "Hybrid glacio-hydrological modelling reveals contrasting runoff changes in Western Patagonia over the 21st century" by Aguayo et al. (2025). The dataset includes three files:1. Basin_attributes.csvA tabular dataset where each row (with basin_id) represents one of the 2,236 catchments, and each column corresponds to a specific attribute.Detailed descriptions of each attribute are available in the Table S1 of Supplementary Material.2. Basin_boundaries.gpkgA GeoPackage file containing the polygon boundaries of the 2,236 catchments in vector format.Each feature includes the corresponding basin_id, allowing for spatial linkage with other dataset components.3. Q_historical.ncContains historical daily runoff time series (2000-2019) for each catchment, based on historical climate conditions from PMET-sim (Aguayo et al., 2024).Provided in NetCDF format with dimensions: date, basin_id, and model. 4. Q_future.ncProvides daily runoff projections for 2022-2099 under multiple General Circulation Models (GCMs; n = 5) and Shared Socioeconomic Pathways (SSPs; n = 2).Stored in NetCDF format with dimensions: date, basin_id, model, gcm, and ssp.The runoff time series are based on different modeling approaches, including: hybrid models (LSTM+OGGM), pure deep learning models (LSTM), and process-based coupled glacio-hydrological models (TUWmodel+OGGM and GR4J+OGGM)

Authors

  • Aguayo, Rodrigo ;
  • Zekollari, Harry ;
  • Hanus, Sarah ;
  • Baez-Villanueva, Oscar Manuel ;
  • Mendoza, Pablo ;
  • Maussion, Fabien
1 Citation0 Mentions77% FAIR2.0 Dataset Index
10.5281/zenodo.150768032025

Development of ArgTag for scalable solid-phase synthesis of aggregating peptides

Raw data for the project "Development of ArgTag for scalable solid-phase synthesis of aggregating peptides".

Authors

  • Freiburghaus, Vincent ;
  • Jeandin, Aliénor ;
  • Frankiewicz, Łukasz ;
  • Yang, Jie ;
  • Hartrampf, Nina
0 Citations0 Mentions73% FAIR0.8 Dataset Index
10.5281/zenodo.156152822025

Images from carotid artery patients

This dataset contains coregistered ultrasound and multispectral optoacoustic tomography (MSOT) carotid artery images from a set of 10 participants. MSOT data contains model-based multiwavelength reconstructions and unmixed images of deoxyhemoglobin, oxyhemoglobin, lipids, and water. This data is used for assessing image quality performance and extraction of unmixed values in the carotid.

Authors

  • Ciobanu, Cristian ;
  • Razansky, Daniel
0 Citations0 Mentions79% FAIR0.3 Dataset Index
10.5281/zenodo.172382472025

Images from carotid artery patients

This dataset contains coregistered ultrasound and multispectral optoacoustic tomography (MSOT) carotid artery images from a set of 10 participants. MSOT data contains model-based multiwavelength reconstructions and unmixed images of deoxyhemoglobin, oxyhemoglobin, lipids, and water. This data is used for assessing image quality performance and extraction of unmixed values in the carotid.

Authors

  • Ciobanu, Cristian ;
  • Razansky, Daniel
0 Citations0 Mentions79% FAIR0.3 Dataset Index
10.5281/zenodo.172382462025

content of dataset subfolders in replication package

No description available

Authors

  • Pirouzkhah, Shirin
0 Citations0 Mentions79% FAIR0.3 Dataset Index
10.5281/zenodo.172277292025

content of dataset subfolders in replication package

No description available

Authors

  • Pirouzkhah, Shirin
0 Citations0 Mentions79% FAIR0.3 Dataset Index
10.5281/zenodo.172277282025