Automated Author ProfileVan Treuren, Will
Van Treuren, Will
Current S-Index
11.5
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
0.8
Average Dataset Index per dataset
Total Datasets
14
Total datasets for this author
Average FAIR Score
15.2%
Average FAIR Score per dataset
Total Citations
18
Total citations to the author's datasets
Total Mentions
0
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 11.5 (sum of 14 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
The weighted normalized UniFrac distance (Lozupone et al AEM 2007) matrix of the 9511 fecal samples used in the American Gut paper. UniFrac was computed using Striped UniFrac (https://github.com/biocore/unifrac). Prior to execution of UniFrac, Deblur (Amir et al mSystems 2017) was run on the samples, all bloom sOTUs were removed (Amir et al mSystems 2017), and samples were rarefied to a depth of 1250 reads (Weiss et al Microbiome 2017). For the phylogeny, fragments were inserted using SEPP (Mirarab et al Pac Symp Biocomput 2012) into the Greengenes 13_5 99% OTU tree (McDonald et al ISME 2012).
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
1 Citation0 Mentions15% FAIR0.7 Dataset Index
10.6084/m9.figshare.6133121January 2018
The unweighted UniFrac distance (Lozupone and Knight AEM 2005) matrix of the 9511 fecal samples used in the American Gut paper. UniFrac was computed using Striped UniFrac (https://github.com/biocore/unifrac). Prior to execution of UniFrac, Deblur (Amir et al mSystems 2017) was run on the samples, all bloom sOTUs were removed (Amir et al mSystems 2017), and samples were rarefied to a depth of 1250 reads (Weiss et al Microbiome 2017). For the phylogeny, fragments were inserted using SEPP (Mirarab et al Pac Symp Biocomput 2012) into the Greengenes 13_5 99% OTU tree (McDonald et al ISME 2012).
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
1 Citation0 Mentions15% FAIR0.7 Dataset Index
10.6084/m9.figshare.6131024January 2018
The Deblur sOTU counts table for the fecal samples used in the American Gut Project manuscript. The samples were trimmed to a common read length of 125nt, and processed by Deblur (Amir et al mSystems 2017). Blooms were removed (Amir et al mSystems 2017) and any sample with fewer than 1250 sequences was omitted. This table is not rarefied,.
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
2 Citations0 Mentions13% FAIR1.1 Dataset Index
10.6084/m9.figshare.6137192January 2018
The Deblur sOTU relative abundance table for the fecal samples used in the American Gut Project manuscript. The samples were trimmed to a common read length of 125nt, and processed by Deblur (Amir et al mSystems 2017). Blooms were removed (Amir et al mSystems 2017) and any sample with fewer than 1250 sequences was omitted. This table is not rarefied, and is normalized to 1.
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
2 Citations0 Mentions15% FAIR1.2 Dataset Index
10.6084/m9.figshare.6137198January 2018
The unweighted UniFrac distance (Lozupone and Knight AEM 2005) matrix of the 9511 fecal samples used in the American Gut paper. UniFrac was computed using Striped UniFrac (https://github.com/biocore/unifrac). Prior to execution of UniFrac, Deblur (Amir et al mSystems 2017) was run on the samples, all bloom sOTUs were removed (Amir et al mSystems 2017), and samples were rarefied to a depth of 1250 reads (Weiss et al Microbiome 2017). For the phylogeny, fragments were inserted using SEPP (Mirarab et al Pac Symp Biocomput 2012) into the Greengenes 13_5 99% OTU tree (McDonald et al ISME 2012).
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
0 Citations0 Mentions15% FAIR0.3 Dataset Index
10.6084/m9.figshare.6131024.v1January 2018
The weighted normalized UniFrac distance (Lozupone et al AEM 2007) matrix of the 9511 fecal samples used in the American Gut paper. UniFrac was computed using Striped UniFrac (https://github.com/biocore/unifrac). Prior to execution of UniFrac, Deblur (Amir et al mSystems 2017) was run on the samples, all bloom sOTUs were removed (Amir et al mSystems 2017), and samples were rarefied to a depth of 1250 reads (Weiss et al Microbiome 2017). For the phylogeny, fragments were inserted using SEPP (Mirarab et al Pac Symp Biocomput 2012) into the Greengenes 13_5 99% OTU tree (McDonald et al ISME 2012).
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
0 Citations0 Mentions15% FAIR0.3 Dataset Index
10.6084/m9.figshare.6133121.v1January 2018
The Deblur sOTU counts table for the fecal samples used in the American Gut Project manuscript. The samples were trimmed to a common read length of 125nt, and processed by Deblur (Amir et al mSystems 2017). Blooms were removed (Amir et al mSystems 2017) and any sample with fewer than 1250 sequences was omitted. This table is not rarefied,.
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
5 Citations0 Mentions15% FAIR2.7 Dataset Index
10.6084/m9.figshare.6137192.v1January 2018
The Deblur sOTU relative abundance table for the fecal samples used in the American Gut Project manuscript. The samples were trimmed to a common read length of 125nt, and processed by Deblur (Amir et al mSystems 2017). Blooms were removed (Amir et al mSystems 2017) and any sample with fewer than 1250 sequences was omitted. This table is not rarefied, and is normalized to 1.
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
0 Citations0 Mentions15% FAIR0.3 Dataset Index
10.6084/m9.figshare.6137198.v1January 2018
The SEPP (Mirarab et al Pac Symp Biocomput 2012) fragment insertion tree used for phylogenetic analyses.
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
- Lovelace, Elijah ;
- R. Hyde, Embriette ;
- Pierce, Emily ;
- TerAvest, Emily ;
- Montassier, Emmanuel ;
- Bolyen, Evan ;
- Bushman, Frederic D. ;
- Ackermann, Gail ;
- D. Wu, Gary ;
- Church, George M. ;
- Rahnavard, Gholamali ;
- Saxe, Gordon ;
- Gogul, Grant ;
- Humphrey, Gregory ;
- D. Holscher, Hannah ;
- Ugrina, Ivo ;
- German, J. Bruce ;
- Gregory Caporaso, J. ;
- Gilbert, Jack ;
- Wozniak, Jacob M. ;
- Kerr, Jacqueline ;
- Ravel, Jacques ;
- Gaffney, James ;
- D. Lewis, James ;
- Morton, James T. ;
- Suchodolski, Jan S. ;
- Jansson, Janet K. ;
- Hampton-Marcell, Jarrad T. ;
- Bobe, Jason ;
- Leach, Jeff ;
- Raes, Jeroen ;
- L. Green, Jessica ;
- Metcalf, Jessica L. ;
- H. Chase, John ;
- A. Eisen, Jonathan ;
- Monk, Jonathan ;
- Navas-Molina, Jose A. ;
- C. Clemente, Jose ;
- Petrosino, Joseph ;
- Ladau, Joshua ;
- Shorenstein, Joshua ;
- Goodrich, Julia ;
- Gauglitz, Julia ;
- Jacobs, Julian ;
- W. Debelius, Justine ;
- Zengler, Karsten ;
- S. Pollard, Katherine ;
- Swanson, Kelly S. ;
- Lewis, Kim ;
- Mayer, Kris ;
- Bittinger, Kyle ;
- Goldasich, Lindsay DeRight ;
- Dillon, Lindsay ;
- S. Zaramela, Livia ;
- R. Thompson, Luke ;
- M. Schriml, Lynn ;
- Dominguez-Bello, Maria G. ;
- Jankowska, Marta M. ;
- Blaser, Martin ;
- Jackson, Matthew A. ;
- Pirrung, Meg ;
- Minson, Michael ;
- Kurisu, Mike ;
- Ajami, Nadim ;
- Sangwan, Naseer ;
- Gottel, Neil R. ;
- Chia, Nicholas ;
- Fierer, Noah ;
- White, Owen ;
- D. Cani, Patrice ;
- Wischmeyer, Paul ;
- Gajer, Pawel ;
- Strandwitz, Philip ;
- Hugenholtz, Phillip ;
- Dorrestein, Pieter C ;
- Kashyap, Purna ;
- Dutton, Rachel ;
- Park, Rachel S. ;
- Xavier, Ramnik J. ;
- Knight, Rob ;
- R. Dunn, Robert ;
- Mills, Robert H. ;
- Krajmalnik-Brown, Rosa ;
- Ley, Ruth ;
- M. Owens, Sarah ;
- T. Kelley, Scott ;
- Klemmer, Scott ;
- Matamoros, Sébastien ;
- Peddada, Shyamal ;
- Mirarab, Siavash ;
- Janssen, Stefan ;
- Moorman, Stephanie ;
- Holmes, Susan ;
- Schwartz, Tara ;
- Eshoo-Anton, Tifani W. ;
- Vigers, Tim ;
- Spector, Timothy ;
- Kosciolek, Tomasz ;
- G. Thackray, Varykina ;
- Pandey, Vineet ;
- Van Treuren, Will ;
- Fang, Xin ;
- Chen, Yingfeng ;
- Vázquez-Baeza, Yoshiki ;
- Zech Xu, Zhenjiang ;
- Aksenov, Alexander A. ;
- Melnik, Alexey V. ;
- Jarmusch, Alan ;
- Geier, Justin ;
- Pevzner, Pavel ;
- Meleshko, Dmitry ;
- Behsaz, Bahar ;
- Reeve, Nicolai ;
- Silva, Ricardo ;
- Zhu, Qiyun ;
- Kopylova, Evguenia ;
- Marotz, Clarisse ;
- Smarr, Larry ;
- Nguyen, Tanya ;
- Mohimani, Hosein ;
- Jiang, Lingjing ;
- Swafford, Austin ;
- Nguyen, Dominic ;
- Song, Se Jin ;
- Sanders, Karenina ;
- Benitez, Rodolfo Antonio Salido ;
- Heale, Arthur Cole ;
- V. Jeste, Dilip ;
- Nguyen, Tanya T. ;
- Brennan, Caitriona ;
- Abramson, Max
1 Citation0 Mentions15% FAIR0.7 Dataset Index
10.6084/m9.figshare.6137270January 2018
The SEPP (Mirarab et al Pac Symp Biocomput 2012) fragment insertion tree used for phylogenetic analyses.
Authors
- McDonald, Daniel ;
- McDonald, Daniel ;
- Robbins-Pianka, Adam ;
- Mann, Allison E. ;
- Vrbanac, Alison ;
- Amir, Amnon ;
- Frazier, Angel ;
- Gonzalez, Antonio ;
- Tripathi, Anupriya ;
- Fahimipour, Ashkaan K. ;
- Brennen, Caitriona ;
- Martino, Cameron ;
- Lebrilla, Carlito ;
- Lozupone, Catherine ;
- M. Lewis Jr., Cecil ;
- Raison, Charles ;
- Zhang, Chi ;
- L. Lauber, Christian ;
- Warinner, Christina ;
- A. Lowry, Christopher ;
- Callewaert, Chris ;
- Bloss, Cinnamon ;
- Huttenhower, Curtis ;
- Knights, Dan ;
- Willner, Dana ;
- Galzerani, Daniela Domingos ;
- Gonzalez, David J. ;
- Mills, David A. ;
- Chopra, Deepak ;
- Gevers, Dirk ;
- Berg-Lyons, Donna ;
- D. Sears, Dorothy ;
- Wendel, Doug ;
- Wolfe, Elaine ;
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10.6084/m9.figshare.6137270.v1January 2018