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Tisch, Doris

Current S-Index

20.8

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.0

Average Dataset Index per dataset

Total Datasets

20

Total datasets for this author

Average FAIR Score

36.9%

Average FAIR Score per dataset

Total Citations

20

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

MOESM1 of Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

Additional file 1: Comparative properties and gene inventory of T. reesei, T. virens and T. atroviride. This file contains additional information on genomic properties and selected gene families from the three Trichoderma species comprising 19 tables. Table S1 summarizes the satellite sequences identified in the Trichoderma genomes and four other fungal genomes. Table S2 summarizes manually curated sequence alignments of transposable element families from the Trichoderma genomes. Table S3 lists the total number of CAZy families in Trichoderma and other fungi. Table S4 lists the glycoside hydrolase (GH) families in Trichoderma and other fungi. Table S5 lists the glycosyltransferase (GT) families in Trichoderma and other fungi. Table S6 lists the polysaccharide lyase (PL) families in Trichoderma and other fungi. Table S7 lists the carbohydrate esterase (CE) families in Trichoderma and other fungi. Table S8 lists the carbohydrate-binding module (CBM) families in Trichoderma and other fungi. Table S9 lists the NRPS, PKS and NRPS-PKS proteins in T. atroviride. Table S10 lists NRPS, PKS and NRPS-PKS proteins in T. virens. Table S11 lists the putative insecticidal toxins in Trichoderma. Table S12 lists the cytochrome P450 CYP4/CYP19/CYP26 class E proteins in Trichoderma. Table S13 lists the small-cysteine rich secreted protein from Trichoderma spp. Table S14 lists the most abundant PFAM domains in those genes that are unique to T. atroviride and T. virens and not present in T. reesei. Table S15 surveys the assembly statistics. Table S16 provides gene model support. Table S17 summarizes gene model statistics. Table S18 provides numbers of genes with functional annotation according to KOG, Gene Ontology, and KEGG classifications. Table S19 lists the largest KOG families responsible for metabolism. (XLSX 57 KB)

Authors

  • Kubicek, Christian ;
  • Herrera-Estrella, Alfredo ;
  • Seidl-Seiboth, Verena ;
  • Martinez, Diego ;
  • Druzhinina, Irina ;
  • Thon, Michael ;
  • Zeilinger, Susanne ;
  • Casas-Flores, Sergio ;
  • Horwitz, Benjamin ;
  • Prasun Mukherjee ;
  • Mukherjee, Mala ;
  • Kredics, László ;
  • Alcaraz, Luis ;
  • Aerts, Andrea ;
  • Antal, Zsuzsanna ;
  • Atanasova, Lea ;
  • Cervantes-Badillo, Mayte ;
  • Challacombe, Jean ;
  • Chertkov, Olga ;
  • McCluskey, Kevin ;
  • Coulpier, Fanny ;
  • Deshpande, Nandan ;
  • Döhren, Hans Von ;
  • Ebbole, Daniel ;
  • Esquivel-Naranjo, Edgardo ;
  • Fekete, Erzsébet ;
  • Flipphi, Michel ;
  • Glaser, Fabian ;
  • Gómez-Rodríguez, Elida ;
  • Gruber, Sabine ;
  • Han, Cliff ;
  • Henrissat, Bernard ;
  • Hermosa, Rosa ;
  • Hernández-Oñate, Miguel ;
  • Karaffa, Levente ;
  • Kosti, Idit ;
  • Crom, Stéphane Le ;
  • Lindquist, Erika ;
  • Lucas, Susan ;
  • Lübeck, Mette ;
  • Lübeck, Peter ;
  • Margeot, Antoine ;
  • Metz, Benjamin ;
  • Misra, Monica ;
  • Nevalainen, Helena ;
  • Omann, Markus ;
  • Packer, Nicolle ;
  • Perrone, Giancarlo ;
  • Uresti-Rivera, Edith ;
  • Salamov, Asaf ;
  • Schmoll, Monika ;
  • Seiboth, Bernhard ;
  • Shapiro, Harris ;
  • Sukno, Serenella ;
  • Tamayo-Ramos, Juan ;
  • Tisch, Doris ;
  • Wiest, Aric ;
  • Wilkinson, Heather ;
  • Zhang, Michael ;
  • Coutinho, Pedro ;
  • Kenerley, Charles ;
  • Monte, Enrique ;
  • Baker, Scott ;
  • Grigoriev, Igor
1 Citation0 Mentions56% FAIR0.9 Dataset Index
10.6084/m9.figshare.10036871.v1January 2019

MOESM2 of The role of PKAc1 in gene regulation and trichodimerol production in Trichoderma reesei

Additional file 2. Functional category analysis of genes with altered transcript levels in Δpkac1 and the subset of genes with overlapping regulation to photoreceptor targets.

Authors

  • Hinterdobler, Wolfgang ;
  • Schuster, André ;
  • Tisch, Doris ;
  • Özkan, Ezgi ;
  • Bazafkan, Hoda ;
  • Schinnerl, Johann ;
  • Brecker, Lothar ;
  • Böhmdorfer, Stefan ;
  • Schmoll, Monika
1 Citation0 Mentions85% FAIR2.4 Dataset Index
10.6084/m9.figshare.9797540January 2019

MOESM3 of The role of PKAc1 in gene regulation and trichodimerol production in Trichoderma reesei

Additional file 3. Genes with altered transcript levels in Δpkac1 and regulation in an induction specific manner.

Authors

  • Hinterdobler, Wolfgang ;
  • Schuster, André ;
  • Tisch, Doris ;
  • Özkan, Ezgi ;
  • Bazafkan, Hoda ;
  • Schinnerl, Johann ;
  • Brecker, Lothar ;
  • Böhmdorfer, Stefan ;
  • Schmoll, Monika
1 Citation0 Mentions85% FAIR2.4 Dataset Index
10.6084/m9.figshare.9797549January 2019

MOESM3 of The role of PKAc1 in gene regulation and trichodimerol production in Trichoderma reesei

Additional file 3. Genes with altered transcript levels in Δpkac1 and regulation in an induction specific manner.

Authors

  • Hinterdobler, Wolfgang ;
  • Schuster, André ;
  • Tisch, Doris ;
  • Özkan, Ezgi ;
  • Bazafkan, Hoda ;
  • Schinnerl, Johann ;
  • Brecker, Lothar ;
  • Böhmdorfer, Stefan ;
  • Schmoll, Monika
1 Citation0 Mentions85% FAIR1.3 Dataset Index
10.6084/m9.figshare.9797549.v1January 2019

MOESM4 of The role of PKAc1 in gene regulation and trichodimerol production in Trichoderma reesei

Additional file 4. Comparative analysis of genes with altered transcript levels in Δpkac1 and genes regulated by photoreceptors, CRE1 and by light upon growth on cellulose.

Authors

  • Hinterdobler, Wolfgang ;
  • Schuster, André ;
  • Tisch, Doris ;
  • Özkan, Ezgi ;
  • Bazafkan, Hoda ;
  • Schinnerl, Johann ;
  • Brecker, Lothar ;
  • Böhmdorfer, Stefan ;
  • Schmoll, Monika
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.9797555January 2019

MOESM4 of The role of PKAc1 in gene regulation and trichodimerol production in Trichoderma reesei

Additional file 4. Comparative analysis of genes with altered transcript levels in Δpkac1 and genes regulated by photoreceptors, CRE1 and by light upon growth on cellulose.

Authors

  • Hinterdobler, Wolfgang ;
  • Schuster, André ;
  • Tisch, Doris ;
  • Özkan, Ezgi ;
  • Bazafkan, Hoda ;
  • Schinnerl, Johann ;
  • Brecker, Lothar ;
  • Böhmdorfer, Stefan ;
  • Schmoll, Monika
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.9797555.v1January 2019

of Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

of Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

Authors

  • Kubicek, Christian ;
  • Herrera-Estrella, Alfredo ;
  • Seidl-Seiboth, Verena ;
  • Martinez, Diego ;
  • Druzhinina, Irina ;
  • Thon, Michael ;
  • Zeilinger, Susanne ;
  • Casas-Flores, Sergio ;
  • Horwitz, Benjamin ;
  • Prasun Mukherjee ;
  • Mukherjee, Mala ;
  • LĂĄszlĂł Kredics ;
  • Alcaraz, Luis ;
  • Aerts, Andrea ;
  • Antal, Zsuzsanna ;
  • Atanasova, Lea ;
  • Cervantes-Badillo, Mayte ;
  • Challacombe, Jean ;
  • Chertkov, Olga ;
  • McCluskey, Kevin ;
  • Coulpier, Fanny ;
  • Deshpande, Nandan ;
  • DĂśhren, Hans Von ;
  • Ebbole, Daniel ;
  • Esquivel-Naranjo, Edgardo ;
  • ErzsĂŠbet Fekete ;
  • Flipphi, Michel ;
  • Glaser, Fabian ;
  • GĂłmez-RodrĂ­Guez, Elida ;
  • Gruber, Sabine ;
  • Han, Cliff ;
  • Henrissat, Bernard ;
  • Hermosa, Rosa ;
  • HernĂĄndez-OĂąate, Miguel ;
  • Karaffa, Levente ;
  • Kosti, Idit ;
  • StĂŠphane Le Crom ;
  • Lindquist, Erika ;
  • Lucas, Susan ;
  • LĂźbeck, Mette ;
  • LĂźbeck, Peter ;
  • Margeot, Antoine ;
  • Metz, Benjamin ;
  • Misra, Monica ;
  • Nevalainen, Helena ;
  • Omann, Markus ;
  • Packer, Nicolle ;
  • Perrone, Giancarlo ;
  • Uresti-Rivera, Edith ;
  • Salamov, Asaf ;
  • Schmoll, Monika ;
  • Seiboth, Bernhard ;
  • Shapiro, Harris ;
  • Sukno, Serenella ;
  • Tamayo-Ramos, Juan ;
  • Tisch, Doris ;
  • Wiest, Aric ;
  • Wilkinson, Heather ;
  • Zhang, Michael ;
  • Coutinho, Pedro ;
  • Kenerley, Charles ;
  • Monte, Enrique ;
  • Baker, Scott ;
  • Grigoriev, Igor
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.10036847January 2019

of Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

of Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

Authors

  • Kubicek, Christian ;
  • Herrera-Estrella, Alfredo ;
  • Seidl-Seiboth, Verena ;
  • Martinez, Diego ;
  • Druzhinina, Irina ;
  • Thon, Michael ;
  • Zeilinger, Susanne ;
  • Casas-Flores, Sergio ;
  • Horwitz, Benjamin ;
  • Prasun Mukherjee ;
  • Mukherjee, Mala ;
  • LĂĄszlĂł Kredics ;
  • Alcaraz, Luis ;
  • Aerts, Andrea ;
  • Antal, Zsuzsanna ;
  • Atanasova, Lea ;
  • Cervantes-Badillo, Mayte ;
  • Challacombe, Jean ;
  • Chertkov, Olga ;
  • McCluskey, Kevin ;
  • Coulpier, Fanny ;
  • Deshpande, Nandan ;
  • DĂśhren, Hans Von ;
  • Ebbole, Daniel ;
  • Esquivel-Naranjo, Edgardo ;
  • ErzsĂŠbet Fekete ;
  • Flipphi, Michel ;
  • Glaser, Fabian ;
  • GĂłmez-RodrĂ­Guez, Elida ;
  • Gruber, Sabine ;
  • Han, Cliff ;
  • Henrissat, Bernard ;
  • Hermosa, Rosa ;
  • HernĂĄndez-OĂąate, Miguel ;
  • Karaffa, Levente ;
  • Kosti, Idit ;
  • StĂŠphane Le Crom ;
  • Lindquist, Erika ;
  • Lucas, Susan ;
  • LĂźbeck, Mette ;
  • LĂźbeck, Peter ;
  • Margeot, Antoine ;
  • Metz, Benjamin ;
  • Misra, Monica ;
  • Nevalainen, Helena ;
  • Omann, Markus ;
  • Packer, Nicolle ;
  • Perrone, Giancarlo ;
  • Uresti-Rivera, Edith ;
  • Salamov, Asaf ;
  • Schmoll, Monika ;
  • Seiboth, Bernhard ;
  • Shapiro, Harris ;
  • Sukno, Serenella ;
  • Tamayo-Ramos, Juan ;
  • Tisch, Doris ;
  • Wiest, Aric ;
  • Wilkinson, Heather ;
  • Zhang, Michael ;
  • Coutinho, Pedro ;
  • Kenerley, Charles ;
  • Monte, Enrique ;
  • Baker, Scott ;
  • Grigoriev, Igor
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.10036847.v1January 2019

MOESM1 of Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

Additional file 1: Comparative properties and gene inventory of T. reesei, T. virens and T. atroviride. This file contains additional information on genomic properties and selected gene families from the three Trichoderma species comprising 19 tables. Table S1 summarizes the satellite sequences identified in the Trichoderma genomes and four other fungal genomes. Table S2 summarizes manually curated sequence alignments of transposable element families from the Trichoderma genomes. Table S3 lists the total number of CAZy families in Trichoderma and other fungi. Table S4 lists the glycoside hydrolase (GH) families in Trichoderma and other fungi. Table S5 lists the glycosyltransferase (GT) families in Trichoderma and other fungi. Table S6 lists the polysaccharide lyase (PL) families in Trichoderma and other fungi. Table S7 lists the carbohydrate esterase (CE) families in Trichoderma and other fungi. Table S8 lists the carbohydrate-binding module (CBM) families in Trichoderma and other fungi. Table S9 lists the NRPS, PKS and NRPS-PKS proteins in T. atroviride. Table S10 lists NRPS, PKS and NRPS-PKS proteins in T. virens. Table S11 lists the putative insecticidal toxins in Trichoderma. Table S12 lists the cytochrome P450 CYP4/CYP19/CYP26 class E proteins in Trichoderma. Table S13 lists the small-cysteine rich secreted protein from Trichoderma spp. Table S14 lists the most abundant PFAM domains in those genes that are unique to T. atroviride and T. virens and not present in T. reesei. Table S15 surveys the assembly statistics. Table S16 provides gene model support. Table S17 summarizes gene model statistics. Table S18 provides numbers of genes with functional annotation according to KOG, Gene Ontology, and KEGG classifications. Table S19 lists the largest KOG families responsible for metabolism. (XLSX 57 KB)

Authors

  • Kubicek, Christian ;
  • Herrera-Estrella, Alfredo ;
  • Seidl-Seiboth, Verena ;
  • Martinez, Diego ;
  • Druzhinina, Irina ;
  • Thon, Michael ;
  • Zeilinger, Susanne ;
  • Casas-Flores, Sergio ;
  • Horwitz, Benjamin ;
  • Prasun Mukherjee ;
  • Mukherjee, Mala ;
  • Kredics, László ;
  • Alcaraz, Luis ;
  • Aerts, Andrea ;
  • Antal, Zsuzsanna ;
  • Atanasova, Lea ;
  • Cervantes-Badillo, Mayte ;
  • Challacombe, Jean ;
  • Chertkov, Olga ;
  • McCluskey, Kevin ;
  • Coulpier, Fanny ;
  • Deshpande, Nandan ;
  • Döhren, Hans Von ;
  • Ebbole, Daniel ;
  • Esquivel-Naranjo, Edgardo ;
  • Fekete, Erzsébet ;
  • Flipphi, Michel ;
  • Glaser, Fabian ;
  • Gómez-Rodríguez, Elida ;
  • Gruber, Sabine ;
  • Han, Cliff ;
  • Henrissat, Bernard ;
  • Hermosa, Rosa ;
  • Hernández-Oñate, Miguel ;
  • Karaffa, Levente ;
  • Kosti, Idit ;
  • Crom, Stéphane Le ;
  • Lindquist, Erika ;
  • Lucas, Susan ;
  • Lübeck, Mette ;
  • Lübeck, Peter ;
  • Margeot, Antoine ;
  • Metz, Benjamin ;
  • Misra, Monica ;
  • Nevalainen, Helena ;
  • Omann, Markus ;
  • Packer, Nicolle ;
  • Perrone, Giancarlo ;
  • Uresti-Rivera, Edith ;
  • Salamov, Asaf ;
  • Schmoll, Monika ;
  • Seiboth, Bernhard ;
  • Shapiro, Harris ;
  • Sukno, Serenella ;
  • Tamayo-Ramos, Juan ;
  • Tisch, Doris ;
  • Wiest, Aric ;
  • Wilkinson, Heather ;
  • Zhang, Michael ;
  • Coutinho, Pedro ;
  • Kenerley, Charles ;
  • Monte, Enrique ;
  • Baker, Scott ;
  • Grigoriev, Igor
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.10036871January 2019

MOESM1 of The role of PKAc1 in gene regulation and trichodimerol production in Trichoderma reesei

Additional file 1. Target genes of PKAc1 during growth on cellulose in light and darkness.

Authors

  • Hinterdobler, Wolfgang ;
  • AndrĂŠ Schuster ;
  • Tisch, Doris ;
  • ĂZkan, Ezgi ;
  • Bazafkan, Hoda ;
  • Schinnerl, Johann ;
  • Brecker, Lothar ;
  • BĂśhmdorfer, Stefan ;
  • Schmoll, Monika
1 Citation0 Mentions85% FAIR2.4 Dataset Index
10.6084/m9.figshare.9797531January 2019