Automated Author Profile

Malinsky, Milan

Current S-Index

13.5

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.5

Average Dataset Index per dataset

Total Datasets

9

Total datasets for this author

Average FAIR Score

76.5%

Average FAIR Score per dataset

Total Citations

2

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Research data supporting "Introgression dynamics of sex-linked chromosomal inversions shape the Malawi cichlid radiation"

No description available

Authors

  • Durbin, Richard ;
  • Svardal, Hannes ;
  • Blumer, L Moritz ;
  • Burskaia, Valentina ;
  • Artiushin, Ilia ;
  • Saha, Jaysmita ;
  • Camacho Garcia, Julia ;
  • Elkin, Joel ;
  • Fischer, Bettina ;
  • Zhou, Chenxi ;
  • Gresham, Sophie ;
  • Malinsky, Milan ;
  • Linderoth, Tyler ;
  • Sawasawa, Wilson ;
  • Bista, Iliana ;
  • Hickey, Aaron ;
  • Kucka, Marek ;
  • Louzada, Sandra ;
  • Zatha, Richard ;
  • Yang, Fengtang ;
  • Rusuwa, Bosco ;
  • Santos, M Emilia ;
  • Chan, Yingguang Frank ;
  • Joyce, Domino ;
  • Böhne, Astrid ;
  • Miska, Eric ;
  • Ngochera, Maxon ;
  • Turner, George ;
  • Hooft van Huysduynen, Alexander ;
  • Van Houtte, Natalie ;
  • Campuzano Jiménez, Francisco ;
  • Vernaz, Grégoire
1 Citation0 Mentions96% FAIR1.4 Dataset Index
10.17863/cam.117242May 2025

Dataset: Genome-wide phylogeography reveals cryptic speciation in a circumglobal planktonic calcifier: Limacina bulimoides

  1. Modifications to DNA extraction and target capture protocols for assessing genome-wide variation in a global dataset of the pteropod Limacina bulimoides2. VCF file for hard-filtered target capture dataset of 161 L. bulimoides (for all analyses except SNAPP phylogeny)3. VCF file for hard-filtered target capture dataset of 161 L. bulimoides and 11 L. trochiformis (for SNAPP phylogeny)4. Bed file of coordinates of Target capture probes that where >80% of the probe was mapped with coverage >15X

Authors

  • Choo, Le Qin ;
  • Spagliardi, Giada ;
  • Malinsky, Milan ;
  • Choquet, Marvin ;
  • Goetze, Erica ;
  • Hoarau, Galice ;
  • Peijnenburg, Katja T.C.A.
0 Citations0 Mentions65% FAIR0.7 Dataset Index
10.17632/7m86twnzp2January 2023

Dataset: Genome-wide phylogeography reveals cryptic speciation in a circumglobal planktonic calcifier: Limacina bulimoides

  1. Modifications to DNA extraction and target capture protocols for assessing genome-wide variation in a global dataset of the pteropod Limacina bulimoides2. VCF file for hard-filtered target capture dataset of 161 L. bulimoides (for all analyses except SNAPP phylogeny)3. VCF file for hard-filtered target capture dataset of 161 L. bulimoides and 11 L. trochiformis (for SNAPP phylogeny)4. Bed file of coordinates of Target capture probes that where >80% of the probe was mapped with coverage >15X

Authors

  • Choo, Le Qin ;
  • Spagliardi, Giada ;
  • Malinsky, Milan ;
  • Choquet, Marvin ;
  • Goetze, Erica ;
  • Hoarau, Galice ;
  • Peijnenburg, Katja T.C.A.
0 Citations0 Mentions65% FAIR0.7 Dataset Index
10.17632/7m86twnzp2.1January 2023

Data from: Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow (Version: 1)

The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 individuals covering 73 species across all major lineages. The average sequence divergence between species pairs is only 0.1–0.25%. These divergence values overlap diversity within species, with 82% of heterozygosity shared between species. Phylogenetic analyses suggest that diversification initially proceeded by serial branching from a generalist Astatotilapia-like ancestor. However, no single species tree adequately represents all species relationships, with evidence for substantial gene flow at multiple times. Common signatures of selection on visual and oxygen transport genes shared by distantly related deep-water species point to both adaptive introgression and independent selection. These findings enhance our understanding of genomic processes underlying rapid species diversification, and provide a platform for future genetic analysis of the Malawi radiation.

Authors

  • Malinsky, Milan ;
  • Svardal, Hannes ;
  • Tyers, Alexandra M. ;
  • Miska, Eric A. ;
  • Genner, Martin J. ;
  • Turner, George F. ;
  • Durbin, Richard
1 Citation0 Mentions77% FAIR2.2 Dataset Index
10.5061/dryad.7rj8k6cNovember 2018

D statistics

No description available

Authors

  • Malinsky, Milan ;
  • Svardal, Hannes ;
  • Tyers, Alexandra M. ;
  • Miska, Eric A. ;
  • Genner, Martin J. ;
  • Turner, George F. ;
  • Durbin, Richard
0 Citations0 Mentions77% FAIR0.8 Dataset Index
10.5061/dryad.7rj8k6c/4January 2018

f statistics

No description available

Authors

  • Malinsky, Milan ;
  • Svardal, Hannes ;
  • Tyers, Alexandra M. ;
  • Miska, Eric A. ;
  • Genner, Martin J. ;
  • Turner, George F. ;
  • Durbin, Richard
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.7rj8k6c/5January 2018

Phylogenetic trees

No description available

Authors

  • Malinsky, Milan ;
  • Svardal, Hannes ;
  • Tyers, Alexandra M. ;
  • Miska, Eric A. ;
  • Genner, Martin J. ;
  • Turner, George F. ;
  • Durbin, Richard
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.7rj8k6c/3January 2018

All whole-genome variant calls (after BEAGLE genotype refinement)

No description available

Authors

  • Malinsky, Milan ;
  • Svardal, Hannes ;
  • Tyers, Alexandra M. ;
  • Miska, Eric A. ;
  • Genner, Martin J. ;
  • Turner, George F. ;
  • Durbin, Richard
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.7rj8k6c/2January 2018

Amino Acid Alignments For Genes in Fig6a

No description available

Authors

  • Malinsky, Milan ;
  • Svardal, Hannes ;
  • Tyers, Alexandra M. ;
  • Miska, Eric A. ;
  • Genner, Martin J. ;
  • Turner, George F. ;
  • Durbin, Richard
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.7rj8k6c/1January 2018