Automated Author Profile

Zhang, Chuan-Xi

Current S-Index

12.3

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.6

Average Dataset Index per dataset

Total Datasets

20

Total datasets for this author

Average FAIR Score

82.6%

Average FAIR Score per dataset

Total Citations

19

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Genomic Data of Thrips hawaiiensis

The Hawaiian flower thrips, Thrips hawaiiensis, is a common flower inhabiting pest of various horticultural plant species. It damages flowers and fruits by puncturing. T. hawaiiensis shows a rapidly developed resistance to chemical control. The lack of a high-quality reference genome limits our understanding of the genetics of T. hawaiiensis. Here, we sequenced the genome of T. hawaiiensis using Oxford Nanopore sequencing technology, Illumina, and Hi-C technology, yielding a genome assembly of 287.59 Mb with scaffold N50 of 13.84 Mb. BUSCO analysis demonstrated the T. hawaiiensis genome assembly has a high-level completeness of 98.7%. In total, 18,289 protein-coding genes and 26.69% repetitive elements were annotated. Our study presents the first high-quality genome assembly of T. hawaiiensis and lays the foundation for further studies on thrips genetic characteristics and pest management.

Authors

  • Hu, Xiaodi ;
  • Tian, Houjun ;
  • Chen, Yixin ;
  • Zheng, Yueqin ;
  • Wei, Hui ;
  • Chen, Jian-Ping ;
  • Zhang, Chuan-Xi ;
  • Chen, Yong ;
  • Li, Yiyuan
1 Citation0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.261251622025

Genomic Data of Thrips hawaiiensis

The Hawaiian flower thrips, Thrips hawaiiensis, is a common flower inhabiting pest of various horticultural plant species. It damages flowers and fruits by puncturing. T. hawaiiensis shows a rapidly developed resistance to chemical control. The lack of a high-quality reference genome limits our understanding of the genetics of T. hawaiiensis. Here, we sequenced the genome of T. hawaiiensis using Oxford Nanopore sequencing technology, Illumina, and Hi-C technology, yielding a genome assembly of 287.59 Mb with scaffold N50 of 13.84 Mb. BUSCO analysis demonstrated the T. hawaiiensis genome assembly has a high-level completeness of 98.7%. In total, 18,289 protein-coding genes and 26.69% repetitive elements were annotated. Our study presents the first high-quality genome assembly of T. hawaiiensis and lays the foundation for further studies on thrips genetic characteristics and pest management.

Authors

  • Hu, Xiaodi ;
  • Tian, Houjun ;
  • Chen, Yixin ;
  • Zheng, Yueqin ;
  • Wei, Hui ;
  • Chen, Jian-Ping ;
  • Zhang, Chuan-Xi ;
  • Chen, Yong ;
  • Li, Yiyuan
0 Citations0 Mentions85% FAIR0.1 Dataset Index
10.6084/m9.figshare.26125162.v12025

Table S3 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>.

Histone acetylation is a specific type of chromatin modification that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown males. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.73755172018

Table S3 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>

Histone acetylation is a specific type of chromatin modifications that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that the NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.7375517.v12018

Table S1 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>.

Histone acetylation is a specific type of chromatin modification that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown males. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.73755382018

Table S1 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>

Histone acetylation is a specific type of chromatin modifications that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that the NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.7375538.v12018

Table S2 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>.

Histone acetylation is a specific type of chromatin modification that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown males. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.73755532018

Table S2 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>

Histone acetylation is a specific type of chromatin modifications that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that the NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.7375553.v12018

Table S4 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>.

Histone acetylation is a specific type of chromatin modification that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown males. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.73755562018

Table S4 from The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper, <i>Nilaparvata lugens</i>

Histone acetylation is a specific type of chromatin modifications that serves as a key regulatory mechanism for many cellular processes in mammals. However, little is known about its biological function in invertebrates. Here, we identified 12 members of histone deacetylases (NlHDACs) in the brown planthopper (BPH), Nilaparvata lugens. RNAi-mediated silencing assay showed that the NlHdac1, NlHdac3 and NlHdac4 played critical roles in female fertility via regulating ovary maturation or ovipositor development. Silencing of NlHdac1 substantially increased acetylation level of histones H3 and H4 in ovaries, indicating NlHDAC1 is the main histone deacetylase in ovaries of BPH. RNA sequencing (RNA-seq) analysis showed that knockdown of NlHdac1 impaired ovary development via multiple signalling pathways including the TOR pathway. Acoustic recording showed that males with NlHdac1 knockdown failed to make courtship songs, and thus were unacceptable to wild-type females, resulting in unfertilized eggs. Competition mating assay showed that wild-type females overwhelmingly preferred to mate with control males over NlHdac1-knockdown. These findings improve our understanding of reproductive strategies controlled by HDACs in insects and provide a potential target for pest control.

Authors

  • Zhang, Jin-Li ;
  • Yuan, Xiao-Bo ;
  • Chen, Sun-Jie ;
  • Chen, Hao-Hao ;
  • Xu, Nan ;
  • Xue, Wen-Hua ;
  • Fu, Sheng-Jie ;
  • Zhang, Chuan-Xi ;
  • Xu, Hai-Jun
1 Citation0 Mentions44% FAIR1.4 Dataset Index
10.6084/m9.figshare.7375556.v12018