Automated Author ProfileTian, Geng
Tian, Geng
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 6.2 (sum of 4 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
The giant panda (Ailuropoda melanoleuca) is considered a symbol of China and is a much loved animal all around the world. It is also one of the worlds most endangered species, making it a flagship species for conservation efforts. As the first fully sequenced Ursidae and the second fully sequenced carnivore after the dog, the whole genome sequence and annotation data provide an unparalleled amount of information to aid in understanding the genetic and biological underpinnings of this unique species, and will help contribute to disease control and conservation efforts.In 2008, BGI completed a first draft of the genome sequence of a three-year old female giant panda named Jingjing, who was used as a model for the 2008 Olympics in Beijing, China (doi: 10.1038/nature08696). Using second-generation Illumina GA sequencing data, the first de novo genome assembly was created using short-read sequencing technology. Here you will find the giant panda genome sequence assembly as well as annotation information, such as gene structure and function, non-coding RNAs, and repeat elements. Also presented are polymorphism information detected in the diploid genome, including SNPs, indels, and structural variations (SVs). The assembly was done using SOAPdenovo software and the panda genome data is visualized via MapView, which is powered by the Google Web Toolkit.
Authors
- Li, Ruiqiang ;
- Fan, Wei ;
- Tian, Geng ;
- Zhu, Hongmei ;
- He, Lin ;
- Cai, Jing ;
- Huang, Quanfei ;
- Cai, Qingle ;
- Li, Bo ;
- Bai, Yinqi ;
- Zhang, Zhihe ;
- Zhang, Yaping ;
- Wang, Wen ;
- Li, Jun ;
- Wei, Fuwen ;
- Li, Heng ;
- Jian, Min ;
- Li, Jianwen ;
- Zhang, Zhaolei ;
- Nielsen, Rasmus ;
- Li, Dawei ;
- Gu, Wanjun ;
- Yang, Zhentao ;
- Xuan, Zhaoling ;
- Ryder, Oliver, A ;
- Leung, Frederick, Chi-Ching ;
- Zhou, Yan ;
- Cao, Jianjun ;
- Sun, Xiao ;
- Fu, Yonggui ;
- Fang, Xiaodong ;
- Guo, Xiaosen ;
- Wang, Bo ;
- Hou, Rong ;
- Shen, Fujun ;
- Mu, Bo ;
- Ni, Peixiang ;
- Lin, Runmao ;
- Qian, Wubin ;
- Wang, Guodong ;
- Yu, Chang ;
- Nie, Wenhui ;
- Wang, Jinhuan ;
- Wu, Zhigang ;
- Liang, Huiqing ;
- Min, Jiumeng ;
- Wu, Qi ;
- Cheng, Shifeng ;
- Ruan, Jue ;
- Wang, Mingwei ;
- Shi, Zhongbin ;
- Wen, Ming ;
- Liu, Binghang ;
- Ren, Xiaoli ;
- Zheng, Huisong ;
- Dong, Dong ;
- Cook, Kathleen ;
- Shan, Gao ;
- Zhang, Hao ;
- Kosiol, Carolin ;
- Xie, Xueying ;
- Lu, Zuhong ;
- Zheng, Hancheng ;
- Li, Yingrui ;
- Steiner, Cynthia, C ;
- Lam, Tommy, Tsan-Yuk ;
- Lin, Siyuan ;
- Zhang, Qinghui ;
- Li, Guoqing ;
- Tian, Jing ;
- Gong, Timing ;
- Liu, Hongde ;
- Zhang, Dejin ;
- Fang, Lin ;
- Ye, Chen ;
- Zhang, Juanbin ;
- Hu, Wenbo ;
- Xu, Anlong ;
- Ren, Yuanyuan ;
- Zhang, Guojie ;
- Bruford, Michael, W ;
- Li, Qibin ;
- Ma, Lijia ;
- Guo, Yiran ;
- An, Na ;
- Hu, Yujie ;
- Zheng, Yang ;
- Shi, Yongyong ;
- Li, Zhiqiang ;
- Liu, Qing ;
- Chen, Yanling ;
- Zhao, Jing ;
- Qu, Ning ;
- Zhao, Shancen ;
- Tian, Feng ;
- Wang, Xiaoling ;
- Wang, Haiyin ;
- Xu, Lizhi ;
- Liu, Xiao ;
- Vinar, Tomas ;
- Wang, Yajun ;
- Lam, Tak-Wah ;
- Yiu, Siu-Ming ;
- Liu, Shiping ;
- Zhang, Hemin ;
- Li, Desheng ;
- Huang, Yan ;
- Wang, Xia ;
- Yang, Guohua ;
- Jiang, Zhi ;
- Wang, Junyi ;
- Qin, Nan ;
- Li, Li ;
- Li, Jingxiang ;
- Bolund, Lars ;
- Kristiansen, Karsten ;
- Wong, Gane, Ka-Shu ;
- Olson, Maynard ;
- Zhang, Xiuqing ;
- Li, Songgang ;
- Yang, Huanming ;
- Wang, Jian ;
- Wang, Jun
The methylome reported and analyzed here was generated from the same sample of peripheral blood mononuclear cells (PBMCs) from a consented donor (Homo sapiens) whose genome was deciphered in the YH project. YH is an anonymous male Han Chinese individual who has no known genetic diseases, and whose genome also serves as an Asian reference genome.Nuclear DNA was extracted and subjected to unbiased, whole-genome bisulfite sequencing (BS-seq) using the Illumina Genome Analyzer. In total, 103.5 Gbp of paired-end sequence data were generated. Of these, 70.4 Gbp (68%) were successfully aligned to either strand of the YH genome with an average mismatch rate of 1.3%, resulting in an average sequencing depth of 12.3-fold per DNA strand or a 24.7-fold overall depth. Of the 18,962,679 CpGs present in the unique haploid part (2.21 Gb) of the YH reference genome sequence, approximately 99.86% were covered by at least one unambiguously mapped read of quality score >14 on either strand, and 92.62% were unambiguously covered on both strands.
Authors
- Li, Yingrui ;
- Zhu, Jingde ;
- Tian, Geng ;
- Li, Ning ;
- Li, Qibin ;
- Ye, Mingzhi ;
- Zheng, Hancheng ;
- Yu, Jian ;
- Wu, Honglong ;
- Sun, Jihua ;
- Zhang, Hongyu ;
- Chen, Quan ;
- Luo, Ruibang ;
- Chen, Minfeng ;
- He, Yinghua ;
- Jin, Xin ;
- Zhang, Qinghui ;
- Yu, Chang ;
- Zhou, Guangyu ;
- Sun, Jinfeng ;
- Huang, Yebo ;
- Zheng, Huisong ;
- Cao, Hongzhi ;
- Zhou, Xiaoyu ;
- Guo, Shicheng ;
- Hu, Xueda ;
- Li, Xin ;
- Kristiansen, Karsten ;
- Bolund, Lars ;
- Xu, Jiujin ;
- Wang, Wen ;
- Yang, Huanming ;
- Wang, Jian ;
- Li, Ruiqiang ;
- Beck, Stephan ;
- Wang, Jun ;
- Zhang, Xiuqing
Genomic data from the YH (Homo sapiens) genome first diploid genome sequence of a Han Chinese, a representative of the Asian population. The genomic DNA used in this study came from an anonymous male Han Chinese individual who has no known genetic diseases.The YH genome was assembled based on 3.3 billion reads using the Illumina Genome Analyzer. We achieved 117.7G nucleotides data and the genome was sequenced to 36-fold average coverage. By aligning the short reads with SOAP, 102.9G nucleotides were mapped onto the NCBI reference genome and 99.97% of the genome was covered. The raw sequences, alignments, consensus genome, variants and relevant tools are released for public use under a CC0 license.
Authors
- Wang, Jun ;
- Wang, Wei ;
- Li, Ruiqiang ;
- Li, Yingrui ;
- Tian, Geng ;
- Goodman, Laurie ;
- Fan, Wei ;
- Zhang, Junqing ;
- Li, Jun ;
- Zhang, Juanbin ;
- Guo, Yiran ;
- Feng, Binxiao ;
- Li, Heng ;
- Lu, Yao ;
- Fang, Xiaodong ;
- Liang, Huiqing ;
- Du, Zhenglin ;
- Li, Dong ;
- Zhao, Yiqing ;
- Hu, Yujie ;
- Yang, Zhenzhen ;
- Zheng, Hancheng ;
- Hellmann, Ines ;
- Inouye, Michael ;
- Pool, John ;
- Yi, Xin ;
- Zhao, Jing ;
- Duan, Jinjie ;
- Zhou, Yan ;
- Qin, Junjie ;
- Ma, Lijia ;
- Li, Guoqing ;
- Yang, Zhentao ;
- Zhang, Guojie ;
- Yang, Bin ;
- Yu, Chang ;
- Liang, Fang ;
- Li, Wenjie ;
- Li, Shaochuan ;
- Li, Dawei ;
- Ni, Peixiang ;
- Ruan, Jue ;
- Li, Qibin ;
- Zhu, Hongmei ;
- Liu, Dongyuan ;
- Lu, Zhike ;
- Li, Ning ;
- Guo, Guangwu ;
- Zhang, Jianguo ;
- Ye, Jia ;
- Fang, Lin ;
- Hao, Qin ;
- Chen, Quan ;
- Liang, Yu ;
- Su, Yeyang ;
- , Asan ;
- Ping, Cuo ;
- Yang, Shuang ;
- Chen, Fang ;
- Li, Li ;
- Zhou, Ke ;
- Zheng, Hongkun ;
- Ren, Yuanyuan ;
- Yang, Ling ;
- Gao, Yang ;
- Yang, Guohua ;
- Li, Zhuo ;
- Feng, Xiaoli ;
- Kristiansen, Karsten ;
- Wong, Gane, Ka-Shu ;
- Nielsen, Rasmus ;
- Durbin, Richard ;
- Bolund, Lars ;
- Zhang, Xiuqing ;
- Li, Songgang ;
- Yang, Huanming ;
- Wang, Jian
Here we present genomic data for the domestic cucumber (Cucumis sativus var. sativus L.). The cucumber is a member of the Cucurbitaceae or cucurbit family, a family of great agricultural and horticultural importance that also includes species such as melons, gourds and squashes. A biologically interesting as well as an economically relevant species, it is used as a model system for plant sex determination and vascular biology studies.The domestic cucumber has seven pairs of chromosomes and a haploid genome of 367 Mb, a smaller genome for the Cucurbitaceae family. The genome was sequenced and assembled with N50 contig and scaffold sizes of 19.8 Kb and 1.14 Mb, respectively. Using the genetic map, 72.8% of the assembled sequences were anchored onto the 7 chromosomes. A total of 26,682 genes were predicted in the current cucumber genome.
Authors
- Huang, Sanwen ;
- Li, Ruiqiang ;
- Zhang, Zhonghua ;
- Li, Li ;
- Gu, Xingfang ;
- Fan, Wei ;
- Lucas, William, J ;
- Wang, Xiaowu ;
- Xie, Bingyan ;
- Ni, Peixiang ;
- Ren, Yuanyuan ;
- Zhu, Hongmei ;
- Li, Jun ;
- Lin, Kui ;
- Jin, Weiwei ;
- Fei, Zhangjun ;
- Li, Guangcun ;
- Staub, Jack ;
- Kilian, Andrzej ;
- van der Vossen, Edwin, AG ;
- Wu, Yang ;
- Guo, Jie ;
- He, Jun ;
- Jia, Zhiqi ;
- Ren, Yi ;
- Tian, Geng ;
- Lu, Yao ;
- Ruan, Jue ;
- Qian, Wubin ;
- Wang, Mingwei ;
- Huang, Quanfei ;
- Li, Bo ;
- Xuan, Zhaoling ;
- Cao, Jianjun ;
- , Asan ;
- Wu, Zhigang ;
- Zhang, Juanbin ;
- Cai, Qingle ;
- Bai, Yinqi ;
- Zhao, Bowen ;
- Han, Yonghua ;
- Li, Ying ;
- Li, Xuefeng ;
- Wang, Shenhao ;
- Shi, Qiuxiang ;
- Liu, Shiqiang ;
- Cho, Won, Kyong ;
- Kim, Jae-Yean ;
- Xu, Yong ;
- Heller-Uszynska, Katarzyna ;
- Miao, Han ;
- Cheng, Zhouchao ;
- Zhang, Shengping ;
- Wu, Jian ;
- Yang, Yuhong ;
- Kang, Houxiang ;
- Li, Man ;
- Liang, Huiqing ;
- Ren, Xiaoli ;
- Shi, Zhongbin ;
- Wen, Ming ;
- Jian, Min ;
- Yang, Hailong ;
- Zhang, Guojie ;
- Yang, Zhentao ;
- Chen, Rui ;
- Liu, Shifang ;
- Li, Jianwen ;
- Ma, Lijia ;
- Liu, Hui ;
- Zhou, Yan ;
- Zhao, Jing ;
- Fang, Xiaodong ;
- Li, Guoqing ;
- Fang, Lin ;
- Li, Yingrui ;
- Liu, Dongyuan ;
- Zheng, Hongkun ;
- Zhang, Yong ;
- Qin, Nan ;
- Li, Zhuo ;
- Yang, Guohua ;
- Yang, Shuang ;
- Bolund, Lars ;
- Kristiansen, Karsten ;
- Zheng, Hancheng ;
- Li, Shaochuan ;
- Zhang, Xiuqing ;
- Yang, Huanming ;
- Wang, Jian ;
- Sun, Rifei ;
- Zhang, Baoxi ;
- Jiang, Shuzhi ;
- Wang, Jun ;
- Du, Yongchen ;
- Li, Songgang