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Automated Author Profile

Jian, Min

Current S-Index

5.1

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.7

Average Dataset Index per dataset

Total Datasets

3

Total datasets for this author

Average FAIR Score

30.8%

Average FAIR Score per dataset

Total Citations

7

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Single cell whole-exome sequences of bladder cancer from an individual.

This dataset contains single-cell and whole-tissue sequencing and annotation data from a muscle-invasive bladder transitional cell carcinoma from one individual. The data available includes: single-cell whole-exome sequences from 55 individual cells, including 44 from the tumor and 11 from normal adjacent tissue; whole-tissue DNA sequence data from this cancer and the matched normal. Additional data includes alignments, SNP calling, and high confidence somatic mutation calling and their allelic frequencies.

Authors

  • Li, Yingrui ;
  • Xu, Xun ;
  • Song, Luting ;
  • Hou, Yong ;
  • Li, Zesong ;
  • Wu, Kui ;
  • Wu, Hanjie ;
  • Liang, Jie ;
  • Jian, Min ;
  • Li, Jingxiang ;
  • Zhang, Xiuqing ;
  • Wang, Jian ;
  • Yang, Huanming ;
  • Wang, Jun
1 Citation0 Mentions31% FAIR1.1 Dataset Index
10.5524/1000372012

Genomic data from the giant panda (<em>Ailuropoda melanoleuca</em>).

The giant panda (Ailuropoda melanoleuca) is considered a symbol of China and is a much loved animal all around the world. It is also one of the worlds most endangered species, making it a flagship species for conservation efforts. As the first fully sequenced Ursidae and the second fully sequenced carnivore after the dog, the whole genome sequence and annotation data provide an unparalleled amount of information to aid in understanding the genetic and biological underpinnings of this unique species, and will help contribute to disease control and conservation efforts.In 2008, BGI completed a first draft of the genome sequence of a three-year old female giant panda named Jingjing, who was used as a model for the 2008 Olympics in Beijing, China (doi: 10.1038/nature08696). Using second-generation Illumina GA sequencing data, the first de novo genome assembly was created using short-read sequencing technology. Here you will find the giant panda genome sequence assembly as well as annotation information, such as gene structure and function, non-coding RNAs, and repeat elements. Also presented are polymorphism information detected in the diploid genome, including SNPs, indels, and structural variations (SVs). The assembly was done using SOAPdenovo software and the panda genome data is visualized via MapView, which is powered by the Google Web Toolkit.

Authors

  • Li, Ruiqiang ;
  • Fan, Wei ;
  • Tian, Geng ;
  • Zhu, Hongmei ;
  • He, Lin ;
  • Cai, Jing ;
  • Huang, Quanfei ;
  • Cai, Qingle ;
  • Li, Bo ;
  • Bai, Yinqi ;
  • Zhang, Zhihe ;
  • Zhang, Yaping ;
  • Wang, Wen ;
  • Li, Jun ;
  • Wei, Fuwen ;
  • Li, Heng ;
  • Jian, Min ;
  • Li, Jianwen ;
  • Zhang, Zhaolei ;
  • Nielsen, Rasmus ;
  • Li, Dawei ;
  • Gu, Wanjun ;
  • Yang, Zhentao ;
  • Xuan, Zhaoling ;
  • Ryder, Oliver, A ;
  • Leung, Frederick, Chi-Ching ;
  • Zhou, Yan ;
  • Cao, Jianjun ;
  • Sun, Xiao ;
  • Fu, Yonggui ;
  • Fang, Xiaodong ;
  • Guo, Xiaosen ;
  • Wang, Bo ;
  • Hou, Rong ;
  • Shen, Fujun ;
  • Mu, Bo ;
  • Ni, Peixiang ;
  • Lin, Runmao ;
  • Qian, Wubin ;
  • Wang, Guodong ;
  • Yu, Chang ;
  • Nie, Wenhui ;
  • Wang, Jinhuan ;
  • Wu, Zhigang ;
  • Liang, Huiqing ;
  • Min, Jiumeng ;
  • Wu, Qi ;
  • Cheng, Shifeng ;
  • Ruan, Jue ;
  • Wang, Mingwei ;
  • Shi, Zhongbin ;
  • Wen, Ming ;
  • Liu, Binghang ;
  • Ren, Xiaoli ;
  • Zheng, Huisong ;
  • Dong, Dong ;
  • Cook, Kathleen ;
  • Shan, Gao ;
  • Zhang, Hao ;
  • Kosiol, Carolin ;
  • Xie, Xueying ;
  • Lu, Zuhong ;
  • Zheng, Hancheng ;
  • Li, Yingrui ;
  • Steiner, Cynthia, C ;
  • Lam, Tommy, Tsan-Yuk ;
  • Lin, Siyuan ;
  • Zhang, Qinghui ;
  • Li, Guoqing ;
  • Tian, Jing ;
  • Gong, Timing ;
  • Liu, Hongde ;
  • Zhang, Dejin ;
  • Fang, Lin ;
  • Ye, Chen ;
  • Zhang, Juanbin ;
  • Hu, Wenbo ;
  • Xu, Anlong ;
  • Ren, Yuanyuan ;
  • Zhang, Guojie ;
  • Bruford, Michael, W ;
  • Li, Qibin ;
  • Ma, Lijia ;
  • Guo, Yiran ;
  • An, Na ;
  • Hu, Yujie ;
  • Zheng, Yang ;
  • Shi, Yongyong ;
  • Li, Zhiqiang ;
  • Liu, Qing ;
  • Chen, Yanling ;
  • Zhao, Jing ;
  • Qu, Ning ;
  • Zhao, Shancen ;
  • Tian, Feng ;
  • Wang, Xiaoling ;
  • Wang, Haiyin ;
  • Xu, Lizhi ;
  • Liu, Xiao ;
  • Vinar, Tomas ;
  • Wang, Yajun ;
  • Lam, Tak-Wah ;
  • Yiu, Siu-Ming ;
  • Liu, Shiping ;
  • Zhang, Hemin ;
  • Li, Desheng ;
  • Huang, Yan ;
  • Wang, Xia ;
  • Yang, Guohua ;
  • Jiang, Zhi ;
  • Wang, Junyi ;
  • Qin, Nan ;
  • Li, Li ;
  • Li, Jingxiang ;
  • Bolund, Lars ;
  • Kristiansen, Karsten ;
  • Wong, Gane, Ka-Shu ;
  • Olson, Maynard ;
  • Zhang, Xiuqing ;
  • Li, Songgang ;
  • Yang, Huanming ;
  • Wang, Jian ;
  • Wang, Jun
1 Citation0 Mentions31% FAIR1.1 Dataset Index
10.5524/1000042011

Genomic data for the domestic cucumber (<em>Cucumis sativus var. sativus L.</em>).

Here we present genomic data for the domestic cucumber (Cucumis sativus var. sativus L.). The cucumber is a member of the Cucurbitaceae or cucurbit family, a family of great agricultural and horticultural importance that also includes species such as melons, gourds and squashes. A biologically interesting as well as an economically relevant species, it is used as a model system for plant sex determination and vascular biology studies.The domestic cucumber has seven pairs of chromosomes and a haploid genome of 367 Mb, a smaller genome for the Cucurbitaceae family. The genome was sequenced and assembled with N50 contig and scaffold sizes of 19.8 Kb and 1.14 Mb, respectively. Using the genetic map, 72.8% of the assembled sequences were anchored onto the 7 chromosomes. A total of 26,682 genes were predicted in the current cucumber genome.

Authors

  • Huang, Sanwen ;
  • Li, Ruiqiang ;
  • Zhang, Zhonghua ;
  • Li, Li ;
  • Gu, Xingfang ;
  • Fan, Wei ;
  • Lucas, William, J ;
  • Wang, Xiaowu ;
  • Xie, Bingyan ;
  • Ni, Peixiang ;
  • Ren, Yuanyuan ;
  • Zhu, Hongmei ;
  • Li, Jun ;
  • Lin, Kui ;
  • Jin, Weiwei ;
  • Fei, Zhangjun ;
  • Li, Guangcun ;
  • Staub, Jack ;
  • Kilian, Andrzej ;
  • van der Vossen, Edwin, AG ;
  • Wu, Yang ;
  • Guo, Jie ;
  • He, Jun ;
  • Jia, Zhiqi ;
  • Ren, Yi ;
  • Tian, Geng ;
  • Lu, Yao ;
  • Ruan, Jue ;
  • Qian, Wubin ;
  • Wang, Mingwei ;
  • Huang, Quanfei ;
  • Li, Bo ;
  • Xuan, Zhaoling ;
  • Cao, Jianjun ;
  • , Asan ;
  • Wu, Zhigang ;
  • Zhang, Juanbin ;
  • Cai, Qingle ;
  • Bai, Yinqi ;
  • Zhao, Bowen ;
  • Han, Yonghua ;
  • Li, Ying ;
  • Li, Xuefeng ;
  • Wang, Shenhao ;
  • Shi, Qiuxiang ;
  • Liu, Shiqiang ;
  • Cho, Won, Kyong ;
  • Kim, Jae-Yean ;
  • Xu, Yong ;
  • Heller-Uszynska, Katarzyna ;
  • Miao, Han ;
  • Cheng, Zhouchao ;
  • Zhang, Shengping ;
  • Wu, Jian ;
  • Yang, Yuhong ;
  • Kang, Houxiang ;
  • Li, Man ;
  • Liang, Huiqing ;
  • Ren, Xiaoli ;
  • Shi, Zhongbin ;
  • Wen, Ming ;
  • Jian, Min ;
  • Yang, Hailong ;
  • Zhang, Guojie ;
  • Yang, Zhentao ;
  • Chen, Rui ;
  • Liu, Shifang ;
  • Li, Jianwen ;
  • Ma, Lijia ;
  • Liu, Hui ;
  • Zhou, Yan ;
  • Zhao, Jing ;
  • Fang, Xiaodong ;
  • Li, Guoqing ;
  • Fang, Lin ;
  • Li, Yingrui ;
  • Liu, Dongyuan ;
  • Zheng, Hongkun ;
  • Zhang, Yong ;
  • Qin, Nan ;
  • Li, Zhuo ;
  • Yang, Guohua ;
  • Yang, Shuang ;
  • Bolund, Lars ;
  • Kristiansen, Karsten ;
  • Zheng, Hancheng ;
  • Li, Shaochuan ;
  • Zhang, Xiuqing ;
  • Yang, Huanming ;
  • Wang, Jian ;
  • Sun, Rifei ;
  • Zhang, Baoxi ;
  • Jiang, Shuzhi ;
  • Wang, Jun ;
  • Du, Yongchen ;
  • Li, Songgang
5 Citations0 Mentions31% FAIR2.9 Dataset Index
10.5524/1000252011