Automated Author ProfileGuo, Xiaosen
Guo, Xiaosen
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 7.8 (sum of 8 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
Watermelon (Citrullus lanatus is an important cucurbit crop grown throughout the world. The annual world production of watermelon is about 90 million tons, making it among the top five most consumed fresh fruits (http://faostat.fao.org/).
We sequenced the 0.425 Gb genome to a depth of approximately 108.6 x with short reads from a series of libraries with various insert sizes ( 100-200 bp, 400 bp, 2 kb, 5 kb, 10 kb and 20 kb) on a HiSeq 2000 sequencer.
The assembled scaffolds of high quality sequences total 46.18 Gb, with the contig and scaffold N50 values of 26.38 kb and 2.38 Mb respectively. We identified 23,440 protein-coding genes.
Authors
- Guo, Shaogui ;
- Zhang, Jianguo ;
- Sun, Honghe ;
- Salse, Jerome ;
- Lucas, William, J ;
- Zhang, Haiying ;
- Zheng, Yi ;
- Mao, Linyong ;
- Ren, Yi ;
- Wang, Zhiwen ;
- Min, Jiumeng ;
- Guo, Xiaosen ;
- Murat, Florent ;
- Ham, Byung-Kook ;
- Zhang, Zhaoliang ;
- Gao, Shan ;
- Huang, Mingyun ;
- Xu, Yimin ;
- Zhong, Silin ;
- Bombarely, Aureliano ;
- Mueller, Lukas, A ;
- Zhao, Hong ;
- He, Hongju ;
- Zhang, Yan ;
- Zhang, Zhonghua ;
- Huang, Sanwen ;
- Tan, Tao ;
- Pang, Erli ;
- Lin, Kui ;
- Hu, Qun ;
- Kuang, Hanhui ;
- Ni, Peixiang ;
- Wang, Bo ;
- Liu, Jingan ;
- Kou, Qinghe ;
- Hou, Wenju ;
- Zou, Xiaohua ;
- Jiang, Jiao ;
- Gong, Guoyi ;
- Klee, Kathrin ;
- Schoof, Heiko ;
- Huang, Ying ;
- Hu, Xuesong ;
- Dong, Shanshan ;
- Liang, Dequan ;
- Wang, Juan ;
- Wu, Kui ;
- Xia, Yang ;
- Zhao, Xiang ;
- Zheng, Zequn ;
- Xing, Miao ;
- Liang, Xinming ;
- Huang, Bangqing ;
- Lv, Tian ;
- Wang, Junyi ;
- Yin, Ye ;
- Yi, Hongping ;
- Li, Ruiqiang ;
- Wu, Mingzhu ;
- Levi, Amnon ;
- Zhang, Xingping ;
- Giovannoni, James, J ;
- Wang, Jun ;
- Li, Yunfu ;
- Fei, Zhangjun ;
- Xu, Yong
We present the genome sequence of a Mongolian male individual. The genome is assembled using short reads produced from the massive parallel sequencing method, resulting in 130.8-fold genome coverage. We identify high-confidence variation sets validated by chip genotyping and PCR-Sanger sequencing, including 3.7 million single nucleotide polymorphisms and 756,234 short insertions and deletions. We assign the paternal inheritance of the individual to the lineage D3a through Y haplogroup analysis and infer Genghis Khan had a common paternal ancestor with Tibeto-Burman populations. We investigate the gene flow between Mongolians and other ethnic groups and demonstrate that the genetic influences on them most likely resulted from the expansion of the Mongol Empire. The Mongolian genome lays a foundation to further understand human evolution and explore population specific genetic causes of diseases/traits in Mongolians and closely related groups.
Authors
- Bai, Haihua ;
- Guo, Xiaosen ;
- Yang, Zili ;
- Narisu, Narisu ;
- Bu, Junjie ;
- Jirimutu, Jirimutu ;
- Liang, Fan ;
- Zhao, Xiang ;
- Xing, Yanping ;
- Wang, Dingzhu ;
- Li, Tongda ;
- Zhang, Yanru ;
- Guan, Baozhu ;
- Yang, Xukui ;
- Zhang, Dong ;
- Shuangshan, Shuangshan ;
- Su, Zhe ;
- Wu, Huiguang ;
- Li, Wenjing ;
- Chen, Ming ;
- Zhu, Shilin ;
- Bayinnamula, Bayinnamula ;
- Chang, Yuqi ;
- Gao, Ying ;
- Lan, Tianming ;
- Suyalatu, Suyalatu ;
- Li, Wenqi ;
- Yang, Xu ;
- Chen, Yujie ;
- Feng, Qiang ;
- Wang, Jian ;
- Yang, Huanming ;
- Wang, Jun ;
- Wu, Qizhu ;
- Yin, Ye ;
- Zhou, Huanmin
DA and F344 are two inbred rat strains with numerous dichotomous phenotypes, including susceptibility to autoimmune disease models and inflammatory responses. While these strains have been extensively studied, little information is available about the DA and F344 genomes, as only the BN and SHR strains have been sequenced to date. Here we report the sequencing of the DA and F344 genomes using next-generation Illumina paired-end read technology, and the first de novo assembly of a rat genome. DA and F344 were sequenced with an average depth of 32-fold, covered 98.9% of the BN reference genome, and included 97.97% of known rat ESTs. New sequences could be assigned to 59 million positions with previously unknown data in the BN reference genome. Differences between DA, F344 and BN included 19 million positions in novel scaffolds, 4.09 million SNPs (including 1.37 million new SNPs), 458,224 short insertions and deletions, and 58,174 structural variants. Genetic differences between DA, F344, and BN, including high-impact SNPs and short insertions and deletions affecting over 2,500 genes, are likely to account for most of the phenotypic variation between these strains. The new DA and F344 genome sequencing data should facilitate gene discovery efforts in rat models of human disease.
Authors
- Guo, Xiaosen ;
- Brenner, Max ;
- Gulko, Percio, S
No description available
Authors
- Rasmussen, Morten ;
- Guo, Xiaosen ;
- Wang, Yong ;
- Lohmueller, Kirk E ;
- Rasmussen, Simon ;
- Albrechtsen, Anders ;
- Skotte, Line ;
- Lindgreen, Stinus ;
- Metspalu, Mait ;
- Jombart, Thibaut ;
- Kivisild, Toomas ;
- Zhai, Weiwei ;
- Eriksson, Anders ;
- Manica, Andrea ;
- Orlando, Ludovic ;
- De La Vega, Francisco M ;
- Tridico, Silvana ;
- Metspalu, Ene ;
- Nielsen, Kasper ;
- Ávila-Arcos, María C ;
- Moreno-Mayar, J Víctor ;
- Muller, Craig ;
- Dortch, Joe ;
- Gilbert, M Thomas P ;
- Lund, Ole ;
- Wesolowska, Agata ;
- Karmin, Monika ;
- Weinert, Lucy A ;
- Wang, Bo ;
- Li, Jun ;
- Tai, Shuaishuai ;
- Xiao, Fei ;
- Hanihara, Tsunehiko ;
- Van Driem, George ;
- Jha, Aashish R ;
- Ricaut, François-Xavier ;
- De Knijff, Peter ;
- Migliano, Andrea B ;
- Romero, Irene Gallego ;
- Kristiansen, Karsten ;
- Lambert, David M ;
- Brunak, Søren ;
- Forster, Peter ;
- Brinkmann, Bernd ;
- Nehlich, Olaf ;
- Bunce, Michael ;
- Richards, Michael ;
- Gupta, Ramneek ;
- Bustamante, Carlos D ;
- Krogh, Anders ;
- Foley, Robert A ;
- Lahr, Marta M ;
- Balloux, Francois ;
- Sicheritz-Pontén, Thomas ;
- Villems, Richard ;
- Nielsen, Rasmus ;
- Wang, Jun ;
- Willerslev, Eske
Here we present Aboriginal Australian (Homo sapiens) genomic sequence obtained from a 100-year-old lock of hair donated by an Aboriginal man from southern Western Australia in the early 20th century.The nuclear genome was sequenced to an overall depth of 6.4-fold. It had a high degree of fragmentation, but no genotype level evidence of sample contamination by DNA from sample handlers of European descent was detected. Over 2 million SNPs were identified after genome mapping and genotyping, approximately 6 percent of which were not previously reported. The mitochondrial genome (mtDNA) was sequenced to an average depth of 338x and found to belong to a new subclade of haplogroup O.
Authors
- Rasmussen, Morten ;
- Guo, Xiaosen ;
- Wang, Yong ;
- Lohmueller, Kirk, E ;
- Rasmussen, Simon ;
- Albrechtsen, Anders ;
- Skotte, Line ;
- Lindgreen, Stinus ;
- Metspalu, Mait ;
- Jombart, Thibaut ;
- Kivisild, Toomas ;
- Zhai, Weiwei ;
- Eriksson, Anders ;
- Manica, Andrea ;
- Orlando, Ludovic ;
- De La Vega, Francisco, M ;
- Tridico, Silvana ;
- Metspalu, Ene ;
- Nielsen, Kasper ;
- Ávila-Arcos, , María, C ;
- Moreno-Mayar, J.Victor ;
- Muller, Craig ;
- Dortch, Joe ;
- Gilbert, M.Thomas, P ;
- Lund, Ole ;
- Wesolowska, Agata ;
- Karmin, Monika ;
- Weinert, Lucy, A ;
- Wang, Bo ;
- Li, Jun ;
- Tai, Shuaishuai ;
- Xiao, Fei ;
- Hanihara, Tsunehiko ;
- van Driem, George ;
- Jha, Aashish, R ;
- Ricaut, François-Xavier, X ;
- de Knijff, Peter ;
- Migliano, Andrea, B ;
- Romero, Irene, Gallego ;
- Kristiansen, Karsten ;
- Lambert, David, M ;
- Brunak, Søren ;
- Forster, Peter ;
- Brinkmann, Bernd ;
- Nehlich, Olaf ;
- Bunce, Michael ;
- Richards, Michael ;
- Gupta, Ramneek ;
- Bustamante, Carlos, D ;
- Krogh, Anders ;
- Foley, Robert, A ;
- Lahr, Marta, M ;
- Balloux, Francois ;
- Sicheritz-Ponten, Thomas ;
- Villems, Richard ;
- Nielsen, Rasmus ;
- Wang, Jun ;
- Willerslev, Eske
Available here is the genome of a male individual from an extinct Palaeo-Eskimo culture, the first known group of Homo sapiens to settle in Greenland.The DNA sample was obtained from ~4,000-year-old permafrost-preserved hair, and was shown to have very low modern DNA contamination. The diploid genome was sequenced to an average depth of 20x using Illumina GAII sequencing platforms, with 79% recovery. Correct indexed reads were mapped to the human genome (hg18) with a suffix array-based method that allows for residual primer trimming. Sequencing yielded a total of 3.5 billion reads.
Authors
- Rasmussen, Morten ;
- Li, Yingrui ;
- Lindgreen, Stinus ;
- Pedersen, Jakob, Skou ;
- Albrechtsen, Anders ;
- Moltke, Ida ;
- Metspalu, Mait ;
- Metspalu, Ene ;
- Kivisild, Toomas ;
- Gupta, Ramneek ;
- Bertalan, Marcelo ;
- Nielsen, Kasper ;
- Gilbert, M.Thomas, P ;
- Wang, Yong ;
- Raghavan, Maanasa ;
- Campos, Paula, F ;
- Kamp, Hanne, Munkholm ;
- Wilson, Andrew, S ;
- Gledhill, Andrew ;
- Tridico, Silvana ;
- Bunce, Michael ;
- Lorenzen, Eline, D ;
- Binladen, Jonas ;
- Guo, Xiaosen ;
- Zhao, Jing ;
- Zhang, Xiuqing ;
- Zhang, Hao ;
- Li, Zhuo ;
- Chen, Minfeng ;
- Orlando, Ludovic ;
- Kristiansen, Karsten ;
- Bak, Mads ;
- Tommerup, Niels ;
- Bendixen, Christian ;
- Pierre, Tracey, L ;
- Gronnow, Bjarne ;
- Meldgaard, Morten ;
- Andreasen, Claus ;
- Fedorova, Sardana, A ;
- Osipova, Ludmila, P ;
- Higham, Thomas, FG ;
- Ramsey, Christopher, Bronk ;
- Hansen, Thomas, VO ;
- Nielsen, Finn, C ;
- Crawford, Michael, H ;
- Brunak, Søren ;
- Sicheritz-Ponten, Thomas ;
- Villems, Richard ;
- Nielsen, Rasmus ;
- Krogh, Anders ;
- Wang, Jun ;
- Willerslev, Eske
The giant panda (Ailuropoda melanoleuca) is considered a symbol of China and is a much loved animal all around the world. It is also one of the worlds most endangered species, making it a flagship species for conservation efforts. As the first fully sequenced Ursidae and the second fully sequenced carnivore after the dog, the whole genome sequence and annotation data provide an unparalleled amount of information to aid in understanding the genetic and biological underpinnings of this unique species, and will help contribute to disease control and conservation efforts.In 2008, BGI completed a first draft of the genome sequence of a three-year old female giant panda named Jingjing, who was used as a model for the 2008 Olympics in Beijing, China (doi: 10.1038/nature08696). Using second-generation Illumina GA sequencing data, the first de novo genome assembly was created using short-read sequencing technology. Here you will find the giant panda genome sequence assembly as well as annotation information, such as gene structure and function, non-coding RNAs, and repeat elements. Also presented are polymorphism information detected in the diploid genome, including SNPs, indels, and structural variations (SVs). The assembly was done using SOAPdenovo software and the panda genome data is visualized via MapView, which is powered by the Google Web Toolkit.
Authors
- Li, Ruiqiang ;
- Fan, Wei ;
- Tian, Geng ;
- Zhu, Hongmei ;
- He, Lin ;
- Cai, Jing ;
- Huang, Quanfei ;
- Cai, Qingle ;
- Li, Bo ;
- Bai, Yinqi ;
- Zhang, Zhihe ;
- Zhang, Yaping ;
- Wang, Wen ;
- Li, Jun ;
- Wei, Fuwen ;
- Li, Heng ;
- Jian, Min ;
- Li, Jianwen ;
- Zhang, Zhaolei ;
- Nielsen, Rasmus ;
- Li, Dawei ;
- Gu, Wanjun ;
- Yang, Zhentao ;
- Xuan, Zhaoling ;
- Ryder, Oliver, A ;
- Leung, Frederick, Chi-Ching ;
- Zhou, Yan ;
- Cao, Jianjun ;
- Sun, Xiao ;
- Fu, Yonggui ;
- Fang, Xiaodong ;
- Guo, Xiaosen ;
- Wang, Bo ;
- Hou, Rong ;
- Shen, Fujun ;
- Mu, Bo ;
- Ni, Peixiang ;
- Lin, Runmao ;
- Qian, Wubin ;
- Wang, Guodong ;
- Yu, Chang ;
- Nie, Wenhui ;
- Wang, Jinhuan ;
- Wu, Zhigang ;
- Liang, Huiqing ;
- Min, Jiumeng ;
- Wu, Qi ;
- Cheng, Shifeng ;
- Ruan, Jue ;
- Wang, Mingwei ;
- Shi, Zhongbin ;
- Wen, Ming ;
- Liu, Binghang ;
- Ren, Xiaoli ;
- Zheng, Huisong ;
- Dong, Dong ;
- Cook, Kathleen ;
- Shan, Gao ;
- Zhang, Hao ;
- Kosiol, Carolin ;
- Xie, Xueying ;
- Lu, Zuhong ;
- Zheng, Hancheng ;
- Li, Yingrui ;
- Steiner, Cynthia, C ;
- Lam, Tommy, Tsan-Yuk ;
- Lin, Siyuan ;
- Zhang, Qinghui ;
- Li, Guoqing ;
- Tian, Jing ;
- Gong, Timing ;
- Liu, Hongde ;
- Zhang, Dejin ;
- Fang, Lin ;
- Ye, Chen ;
- Zhang, Juanbin ;
- Hu, Wenbo ;
- Xu, Anlong ;
- Ren, Yuanyuan ;
- Zhang, Guojie ;
- Bruford, Michael, W ;
- Li, Qibin ;
- Ma, Lijia ;
- Guo, Yiran ;
- An, Na ;
- Hu, Yujie ;
- Zheng, Yang ;
- Shi, Yongyong ;
- Li, Zhiqiang ;
- Liu, Qing ;
- Chen, Yanling ;
- Zhao, Jing ;
- Qu, Ning ;
- Zhao, Shancen ;
- Tian, Feng ;
- Wang, Xiaoling ;
- Wang, Haiyin ;
- Xu, Lizhi ;
- Liu, Xiao ;
- Vinar, Tomas ;
- Wang, Yajun ;
- Lam, Tak-Wah ;
- Yiu, Siu-Ming ;
- Liu, Shiping ;
- Zhang, Hemin ;
- Li, Desheng ;
- Huang, Yan ;
- Wang, Xia ;
- Yang, Guohua ;
- Jiang, Zhi ;
- Wang, Junyi ;
- Qin, Nan ;
- Li, Li ;
- Li, Jingxiang ;
- Bolund, Lars ;
- Kristiansen, Karsten ;
- Wong, Gane, Ka-Shu ;
- Olson, Maynard ;
- Zhang, Xiuqing ;
- Li, Songgang ;
- Yang, Huanming ;
- Wang, Jian ;
- Wang, Jun
No description available
Authors
- Rasmussen, Morten ;
- Li, Yingrui ;
- Lindgreen, Stinus ;
- Pedersen, Jakob Skou ;
- Albrechtsen, Anders ;
- Moltke, Ida ;
- Metspalu, Mait ;
- Metspalu, Ene ;
- Kivisild, Toomas ;
- Gupta, Ramneek ;
- Bertalan, Marcelo ;
- Nielsen, Kasper ;
- Gilbert, M Thomas P ;
- Wang, Yong ;
- Raghavan, Maanasa ;
- Campos, Paula F ;
- Munkholm Kamp, Hanne ;
- Wilson, Andrew S ;
- Gledhill, Andrew ;
- Tridico, Silvana ;
- Bunce, Michael ;
- Lorenzen, Eline D ;
- Binladen, Jonas ;
- Guo, Xiaosen ;
- Zhao, Jing ;
- Zhang, Xiuqing ;
- Zhang, Hao ;
- Li, Zhuo ;
- Chen, Minfeng ;
- Orlando, Ludovic ;
- Kristiansen, Karsten ;
- Bak, Mads ;
- Tommerup, Niels ;
- Bendixen, Christian ;
- Pierre, Tracey L ;
- Grønnow, Bjarne ;
- Meldgaard, Morten ;
- Andreasen, Claus ;
- Fedorova, Sardana A ;
- Osipova, Ludmila P ;
- Higham, Thomas FG ;
- Bronk Ramsey, Christopher ;
- V. O. Hansen, Thomas ;
- Nielsen, Finn C ;
- Crawford, Michael H ;
- Brunak, Søren ;
- Sicheritz-Pontén, Thomas ;
- Villems, Richard ;
- Nielsen, Rasmus ;
- Krogh, Anders ;
- Wang, Jun ;
- Willerslev, Eske