Automated Author ProfileSegata, Nicola
Segata, Nicola
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 9.1 (sum of 28 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
Additional file 2: Supplemental Tables S1-S18.
Authors
- Granehäll, Lena ;
- Huang, Kun D. ;
- Tett, Adrian ;
- Manghi, Paolo ;
- Paladin, Alice ;
- O’Sullivan, Niall ;
- Rota-Stabelli, Omar ;
- Segata, Nicola ;
- Zink, Albert ;
- Maixner, Frank
Supplementary Table 8. A) Normalized expression levels of the stool DEmiRNAs in data from the TissueAtlas. The Z-score-transformed expression levels are also reported in the bottom. B) Epigenetic states computed at miRNA loci considering the data from the Roadmap Epigenomics Project. AT, active TSS; BT, Bivalent/Poised TSS; E, Enhancer; Q, Quiescent region; R, Repressed region; ST, Strong transcription; WT, Weak transcription; ZNF, Zinc-finger genes and repeated region.
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio
Additional file 2: Supplemental Tables S1-S18.
Authors
- Granehäll, Lena ;
- Huang, Kun D. ;
- Tett, Adrian ;
- Manghi, Paolo ;
- Paladin, Alice ;
- O’Sullivan, Niall ;
- Rota-Stabelli, Omar ;
- Segata, Nicola ;
- Zink, Albert ;
- Maixner, Frank
Supplementary Table 2. Dietary and lifestyle information of the analysed subjects. For continuous covariates the average and standard deviation are reported.
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio
Supplementary Table 6. Analysis of xenomiR expression levels in stool (A) and in plasma samples (B). C) Set of RNA sequences aligned with gma-MIR6300 using BLAST. D) Homology analysis between detected xenomiRs and human miRNAs
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio
Supplementary Table 1. Alignment statistics and information of the small RNA-Seq data in stool (A) and plasma (B) samples and alignment statistics and information of the stool shotgun metagenomic data (C).
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio
Supplementary Table 5. A. Expression levels and differential expression analysis of plasma miRNAs. B. Plasma levels of the DEmiRNAs identified in the analysis of stool samples. C. Correlation analysis between miRNA levels in stool and plasma samples.
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio
Supplementary Table 3. A) Expression levels and differential expression analysis of stool miRNAs; B) Results of the differential expression analysis of the 49 stool DEmiRNAs considering different covariates in the DESeq2 model; C) Results of a correlation analysis between stool DEmiRNAs expression and subject age and years of non-omnivorous diet; D) HMDD annotations for the hairpin of stool DEmiRNAs; E) Differential expression analysis of stool DEmiRNAs considering an independent group of O subjects (O validation).
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio
Supplementary Table 4. A) Stool miRNAs belonging to specific correlation clusters of nutrients or bacterial species as reported in Supplementary Figure 2B-C. B) List of miRNA-nutrient associations supported by a significant Spearman correlation (adj. p < 0.05). Information of a GLM model computed for each pair are reported. Models adjusted by sex, age, and BMI.
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio
Supplementary Table 7. A. List of functional processes enriched in targets of different groups of stool miRNAs. B. Validated targets of stool miRNA analysed in the functional enrichment analysis.
Authors
- Ferrero, Giulio ;
- Tarallo, Sonia ;
- De Filippis, Francesca ;
- Francavilla, Antonio ;
- Pasolli, Edoardo ;
- Panero, Valentina ;
- cordero, francesca ;
- Segata, Nicola ;
- Grioni, Sara ;
- Pensa, Ruggero ;
- Pardini, Barbara ;
- Ercolini, Danilo ;
- Naccarati, Alessio