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Automated Author Profile

Yepez, Vicente

Technical University of Munich
0000-0001-7916-3643

Current S-Index

141.9

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

2.1

Average Dataset Index per dataset

Total Datasets

67

Total datasets for this author

Average FAIR Score

37.1%

Average FAIR Score per dataset

Total Citations

56

Total citations to the author's datasets

Total Mentions

169

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Analysis of 3,760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes (Version: 2.0)

Abnormal gene expression and splicing play a key role in hematologic malignancy. Here, we provide a catalog of transcriptomic and genomic aberrations of 3,760 hematologic malignancy samples spanning 24 disease entities. This version contains 19,732 protein-coding genes from GRCh37 annotated by Gencode (v33b).doi: https://doi.org/10.1101/2023.08.08.23293420

Authors

  • Xueqi Cao ;
  • Ata Jadid Ahari ;
  • Sandra Huber ;
  • Franziska R. Traube ;
  • Marc Seifert ;
  • Christopher C. Oakes ;
  • Polina Secheyko ;
  • Sergey Vilov ;
  • Ines Scheller ;
  • Nils Wagner ;
  • Vicente A. Yépez ;
  • Piers Blombery ;
  • Torsten Haferlach ;
  • Matthias Heinig ;
  • Leonhard Wachutka ;
  • Stephan Hutter ;
  • Julien Gagneur
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.5281/zenodo.8341456February 2024

Analysis of 3,760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes (Version: 2.0)

Abnormal gene expression and splicing play a key role in hematologic malignancy. Here, we provide a catalog of transcriptomic and genomic aberrations of 3,760 hematologic malignancy samples spanning 24 disease entities. This version contains 19,732 protein-coding genes from GRCh37 annotated by Gencode (v33b).doi: https://doi.org/10.1101/2023.08.08.23293420

Authors

  • Xueqi Cao ;
  • Ata Jadid Ahari ;
  • Sandra Huber ;
  • Franziska R. Traube ;
  • Marc Seifert ;
  • Christopher C. Oakes ;
  • Polina Secheyko ;
  • Sergey Vilov ;
  • Ines Scheller ;
  • Nils Wagner ;
  • Vicente A. Yépez ;
  • Piers Blombery ;
  • Torsten Haferlach ;
  • Matthias Heinig ;
  • Leonhard Wachutka ;
  • Stephan Hutter ;
  • Julien Gagneur
0 Citations0 Mentions73% FAIR1.8 Dataset Index
10.5281/zenodo.10656715February 2024

Additional file 21 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 21: Supplementary file 3. Fusion events aggregated by disease entities and genes.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions85% FAIR2.4 Dataset Index
10.6084/m9.figshare.26994865.v1January 2024

Additional file 9 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 9: Table S8. Number of splicing outliers aggregated by disease entities and genes.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.26994829January 2024

Additional file 9 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 9: Table S8. Number of splicing outliers aggregated by disease entities and genes.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.26994829.v1January 2024

Additional file 10 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 10: Table S9. Number of splice-affecting variants aggregated by disease entities and genes.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.26994832January 2024

Additional file 10 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 10: Table S9. Number of splice-affecting variants aggregated by disease entities and genes.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.26994832.v1January 2024

Additional file 11 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 11: Table S10. Fraction of splice-affecting variants within filtered variants aggregated by disease entities and genes.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.26994835January 2024

Additional file 11 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 11: Table S10. Fraction of splice-affecting variants within filtered variants aggregated by disease entities and genes.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.26994835.v1January 2024

Additional file 12 of Analysis of 3760 hematologic malignancies reveals rare transcriptomic aberrations of driver genes

Additional file 12: Table S11. Prediction result of the hematologic malignancy driver gene prediction model using the complete dataset and seven IntOGen tools, OUTRIDER, NB-act, FRASER, AbSplice, and external gene functional features.

Authors

  • Cao, Xueqi ;
  • Huber, Sandra ;
  • Ahari, Ata Jadid ;
  • Traube, Franziska R. ;
  • Seifert, Marc ;
  • Oakes, Christopher C. ;
  • Secheyko, Polina ;
  • Vilov, Sergey ;
  • Scheller, Ines F. ;
  • Wagner, Nils ;
  • Yépez, Vicente A. ;
  • Blombery, Piers ;
  • Haferlach, Torsten ;
  • Heinig, Matthias ;
  • Wachutka, Leonhard ;
  • Hutter, Stephan ;
  • Gagneur, Julien
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.26994838January 2024