Automated Author ProfileBoutte, Julien
Boutte, Julien
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 3.5 (sum of 7 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
Alignments of 835 putatively single copy genes sampled from Apocynaceae
Authors
- Straub, Shannon ;
- Livshultz, Tatyana ;
- Fishbein, Mark ;
- Boutte, Julien
Alignments of 835 putatively single copy genes sampled from Apocynaceae
Authors
- Straub, Shannon ;
- Livshultz, Tatyana ;
- Fishbein, Mark ;
- Boutte, Julien
Targeted sequencing probes for solution hybridization to enrich for single copy nuclear genes in Apocynaceae. This file does not contain probes for dhs and hss.
Authors
- Straub, Shannon ;
- Livshultz, Tatyana ;
- Fishbein, Mark ;
- Boutte, Julien
Targeted sequencing probes for solution hybridization to enrich for single copy nuclear genes in Apocynaceae. This file does not contain probes for dhs and hss.
Authors
- Straub, Shannon ;
- Livshultz, Tatyana ;
- Fishbein, Mark ;
- Boutte, Julien
Targeted sequencing probes for solution hybridization to enrich for single copy nuclear genes in Apocynaceae. This file also contains probes for dhs and hss.
Authors
- Straub, Shannon ;
- Livshultz, Tatyana ;
- Fishbein, Mark ;
- Boutte, Julien
Targeted sequencing probes for solution hybridization to enrich for single copy nuclear genes in Apocynaceae. This file also contains probes for dhs and hss.
Authors
- Straub, Shannon ;
- Livshultz, Tatyana ;
- Fishbein, Mark ;
- Boutte, Julien
The combination of long-reads and long-range information to produce genome assemblies is now accepted as a common standard. This strategy not only allows access to the gene catalogue of a given species but also reveals the architecture and organisation of chromosomes, including complex regions like telomeres and centromeres. The Brassica genus is not exempt and many assemblies based on long reads are now available. The reference genome for Brassica napus, Darmor-bzh, which was published in 2014, has been produced using short-reads and its contiguity was extremely low if compared to current assemblies of the Brassica genus.
Here, we report the new long-reads assembly of Darmor-bzh genome (Brassica napus) generated by combining long-reads sequencing data, optical and genetic maps. Using the PromethION device and six flowcells, we generated about 16M long-reads representing 93X coverage and more importantly 6X with reads longer than 100Kb. This ultralong-reads dataset allows us to generate one of the most contiguous and complete assembly of a Brassica genome to date (contigs N50 > 10Mb). In addition, we exploited all the advantages of the nanopore technology to detect modified bases and sequence transcriptomic data using direct RNA to annotate the genome and focus on resistance genes.
Using these cutting edge technologies, and in particular by relying on all the advantages of the nanopore technology, we provide the most contiguous Brassica napus assembly, a resource that will be valuable for the Brassica community for crop improvement and will facilitate the rapid selection of agronomically important traits.
Authors
- Rousseau-Gueutin, Mathieu ;
- Belser, Caroline ;
- Da Silva, Corinne ;
- Richard, Gautier ;
- Istace, Benjamin ;
- Cruaud, Corinne ;
- Falentin, Cyril ;
- Boideau, Franz ;
- Boutte, Julien ;
- Delourme, Regine ;
- Deniot, Gwenaëlle ;
- Engelen, Stefan ;
- de Carvalho, Julie, Ferreira ;
- Lemainque, Arnaud ;
- Maillet, Loeiz ;
- Morice, Jérôme ;
- Wincker, Patrick ;
- Denoeud, France ;
- Chèvre, Anne-Marie ;
- Aury, Jean-Marc