Automated Author Profile

Richards, Shane

University of Tasmania
0000-0002-9638-5827

Current S-Index

5.5

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.4

Average Dataset Index per dataset

Total Datasets

4

Total datasets for this author

Average FAIR Score

55.3%

Average FAIR Score per dataset

Total Citations

4

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Warming, Heatwave and Rain Manipulation Experimental Research

No description available

Authors

  • Melissa Gerwin ;
  • Shane A. Richards ;
  • Elizabeth Wandrag ;
  • Mark Hovenden
0 Citations0 Mentions31% FAIR0.7 Dataset Index
10.25959/b0ja-bb762025

Adaptive interventions for advancing in situ wildlife disease management

No description available

Authors

  • Vicky Wilkinson ;
  • Scott Carver ;
  • Shane Richards ;
  • Christina Naesborg-Nielsen ;
  • Leah Burgess ;
  • Kate Mounsey
1 Citation0 Mentions40% FAIR0.7 Dataset Index
10.25959/st1x-rs322024

Performance of akaike information criterion and bayesian information criterion in selecting partition models and mixture models (Version: 6)

In molecular phylogenetics, partition models and mixture models provide different approaches to accommodating heterogeneity in genomic sequencing data. Both types of models generally give a superior fit to data than models that assume the process of sequence evolution is homogeneous across sites and lineages. The Akaike Information Criterion (AIC), an estimator of Kullback-Leibler divergence, and the Bayesian Information Criterion (BIC) are popular tools to select models in phylogenetics. Recent work suggests AIC should not be used for comparing mixture and partition models. In this work, we clarify that this difficulty is not fully explained by AIC misestimating the Kullback-Leibler divergence. We also investigate the performance of the AIC and BIC by comparing amongst mixture models and amongst partition models. We find that under non-standard conditions (i.e. when some edges have a small expected number of changes), AIC underestimates the expected Kullback-Leibler divergence. Under such conditions, AIC preferred the complex mixture models and BIC preferred the simpler mixture models. The mixture models selected by AIC had a better performance in estimating the edge length, while the simpler models selected by BIC performed better in estimating the base frequencies and substitution rate parameters. In contrast, AIC and BIC both prefer simpler partition models over more complex partition models under non-standard conditions, despite the fact that the more complex partition model was the generating model.  We also investigated how mispartitioning (i.e. grouping sites that have not evolved under the same process) affects both the performance of partition models compared to mixture models and the model selection process. We found that as the level of mispartitioning increases, the bias of AIC in estimating the expected Kullback-Leibler divergence remains the same, and the branch lengths and evolutionary parameters estimated by partition models become less accurate.  We recommend that researchers be cautious when using AIC and BIC to select among partition and mixture models; other alternatives, such as cross-validation and bootstrapping should be explored, but may suffer similar limitations.

Authors

  • Liu, Qin ;
  • Charleston, Michael ;
  • Richards, Shane ;
  • Holland, Barbara
1 Citation0 Mentions73% FAIR2.1 Dataset Index
10.5061/dryad.1jwstqjwj2023

Mountain goat molt from community photographs (Version: 3)

Participatory approaches, such as community photography, can engage the public in questions of societal and scientific interest while helping advance understanding of ecological patterns and processes. We combined data extracted from community-sourced, spatially-explicit photographs with research findings from 2018 fieldwork in the Yukon, Canada, to evaluate winter coat molt patterns and phenology in mountain goats (Oreamnos americanus), a cold-adapted, alpine mammal. Leveraging the community science portals iNaturalist and CitSci, in less than a year we amassed a database of almost seven hundred unique photographs spanning some 4500 kms between latitudes 37.6°N and 61.1°N from 0m to 4333m elevation. Using statistical methods accounting for incomplete data, a common issue in community science data sets, we identified the effects of intrinsic (sex and presence of offspring) and broad environmental (latitude and elevation) factors on molt onset and rate and compared our findings with published data. Shedding occurred over a 3-month period between May 29 and September 6. Effects of sex and offspring on the timing of molt were consistent between the community-sourced and our Yukon data and with findings on wild mountain goats at a long-term research site in west-central Alberta, Canada. Males molted first, followed by females without offspring (4.4 days later in the coarse-grained, geographically-wide community science sample; 29.2 days later in our fine-grained Yukon sample) and lastly females with new kids (6.2; 21.2 days later, respectively). Shedding was later at higher elevations and faster at northern latitudes. Our findings establish a basis for employing community photography to examine broad-scale questions about the timing of ecological events, as well as sex differences in response to possible climate drivers. In addition, community photography can help inspire public participation in environmental and outdoor activities specifically with reference to iconic wildlife.

Authors

  • Nowak, Katarzyna ;
  • Richards, Shane ;
  • Berger, Joel ;
  • Panikowski, Amy ;
  • Jacob, Aerin ;
  • Reid, Donald ;
  • Newman, Greg ;
  • Young, Nicholas ;
  • Beckmann, Jon
2 Citations0 Mentions77% FAIR2.3 Dataset Index
10.5061/dryad.8w9ghx3k32020