Automated Author Profile

Monteiro, Fanny

0000-0002-8790-0188

Current S-Index

11.5

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

2.3

Average Dataset Index per dataset

Total Datasets

5

Total datasets for this author

Average FAIR Score

68.1%

Average FAIR Score per dataset

Total Citations

8

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Coccolithophore Abundance, Size, Carbon And Distribution Estimates (CASCADE)

CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197)Correspondence to: Joost de Vries, [email protected] fixes:actually fixes Guerreiro et al., 2023 longitude issuereplaces negative PIC predictions from GLM with NA (an issue with some small HOL species)v.2 fixes:1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped

Authors

  • de Vries, Joost ;
  • Poulton, Alex J. ;
  • Young, Jeremy R. ;
  • Monteiro, Fanny M. ;
  • Sheward, Rosie M. ;
  • Johnson, Roberta ;
  • Hagino, Kyoko ;
  • Ziveri, Patrizia ;
  • Wolf, Levi J.
3 Citations0 Mentions77% FAIR3.1 Dataset Index
10.5281/zenodo.12794779October 2024

Coccolithophore Abundance, Size, Carbon And Distribution Estimates (CASCADE)

CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197)Correspondence to: Joost de Vries, [email protected] fixes:actually fixes Guerreiro et al., 2023 longitude issuereplaces negative PIC predictions from GLM with NA (an issue with some small HOL species)v.2 fixes:1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped

Authors

  • de Vries, Joost ;
  • Poulton, Alex J. ;
  • Young, Jeremy R. ;
  • Monteiro, Fanny M. ;
  • Sheward, Rosie M. ;
  • Johnson, Roberta ;
  • Hagino, Kyoko ;
  • Ziveri, Patrizia ;
  • Wolf, Levi J.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.5281/zenodo.13919902October 2024

Coccolithophore Abundance, Size, Carbon And Distribution Estimates (CASCADE)

CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197) Correspondence to: Joost de Vries, [email protected] has some fixes:1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped

Authors

  • de Vries, Joost ;
  • Poulton, Alex J. ;
  • Young, Jeremy R. ;
  • Monteiro, Fanny M. ;
  • Sheward, Rosie M. ;
  • Johnson, Roberta ;
  • Hagino, Kyoko ;
  • Ziveri, Patrizia ;
  • Wolf, Levi J.
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5281/zenodo.13736214September 2024

Coccolithophore Abundance, Size, Carbon And Distribution Estimates (CASCADE)

CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197) Correspondence to: Joost de Vries, [email protected]

Authors

  • de Vries, Joost ;
  • Poulton, Alex J. ;
  • Young, Jeremy R. ;
  • Monteiro, Fanny M. ;
  • Sheward, Rosie M. ;
  • Johnson, Roberta ;
  • Hagino, Kyoko ;
  • Ziveri, Patrizia ;
  • Wolf, Levi J.
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5281/zenodo.12794780July 2024

Global SEM coccolithophore abundance compilation

Coccolithophores are globally important marine calcifying phytoplankton. They contribute to the organic carbon pump through the primary production and the ballast of organic matter, and to the carbonate pump through the production of calcium carbonate. Here we compiled all available scanning electron microscopy (SEM) coccolithophore abundance observations. Taxa were standardized following NannoTax3 to a species level where possible. Subspecies (e.a. C. leptoporus subsp. leptoporus and C. leptoporus subsp. quadriperforatus) were grouped as single species. The database contains 2556 abundance observations from 35 different publications. The data span the period of 1993-2017, with observations from all ocean basins and all seasons, and at depths ranging from the surface to 5000 m. We limited our compilation to SEM observations (or observations which further identified samples with SEM) because SEM provides greater detail of coccolithophore diversity than more commonly used polarized light microscopy. Although this limits the number of observations, this allows for a more in-depth analysis of coccolithophore ecology, such as the ecological significance of the coccolithophore life cycle.

Authors

  • de Vries, Joost C ;
  • Monteiro, Fanny ;
  • Andruleit, Harald ;
  • Böckel, Babette ;
  • Baumann, Karl-Heinz ;
  • Cerino, Federica ;
  • Charalampopoulou, Anastasia ;
  • Cepek, Martin ;
  • Cros, Lluisa ;
  • D'Amario, Barbara ;
  • Daniels, Chris J ;
  • Dimiza, Margarita D ;
  • Estrada, Marta ;
  • Eynaud, Frédérique ;
  • Giraudeau, Jacques ;
  • Godrijan, Jelena ;
  • Guerreiro, Catarina V ;
  • Guptha, M V S ;
  • Thierstein, Hans R ;
  • Haidar, Ali T ;
  • Karatsolis, Boris Theofanis ;
  • Kinkel, Hanno ;
  • Luan, Qingshan ;
  • Malinverno, Elisa ;
  • Patil, Shramik M ;
  • Mohan, Rahul ;
  • Poulton, Alex J ;
  • Saavedra-Pellitero, Mariem ;
  • Schiebel, Ralf ;
  • Smith, Helen Elizabeth Katie ;
  • Šupraha, Luka ;
  • Takahashi, Kyoma ;
  • Okada, H ;
  • Triantaphyllou, Maria ;
  • Silver, Mary W
5 Citations0 Mentions96% FAIR4.6 Dataset Index
10.1594/pangaea.922933January 2020