KofamScan v1.3.0 was used to assign KEGG Orthologs (KOs) to the Avena sativa (cv. Sang) proteins. exec_annotation Asativa_sang.v1.1.aa.fa -o Asativa_sang.v1.1.aa.ko.txt --profile profiles/eukaryote.hal --ko-list ko_list The Oat proteins (Asativa_sang.v1.1.aa.fa) were downloaded from https://doi.org/10.5447/ipk/2022/2
The KOfam database was downloaded from https://www.genome.jp/ftp/db/kofam/archives/2021-12-01/

KofamScan v1.3.0 was used to assign KEGG Orthologs (KOs) to the Avena sativa (cv. Sang) proteins. exec_annotation Asativa_sang.v1.1.aa.fa -o Asativa_sang.v1.1.aa.ko.txt --profile profiles/eukaryote.hal --ko-list ko_list The Oat proteins (Asativa_sang.v1.1.aa.fa) were downloaded from https://doi.org/10.5447/ipk/2022/2
The KOfam database was downloaded from https://www.genome.jp/ftp/db/kofam/archives/2021-12-01/

This is the supplementary information of the manuscript 'Mutation in SHAGGY-like kinase AsGSK2.1 causes a short kernel phenotype in oat (Avena sativa)' published as a part of the thesis 'Annotating and making use of the Avena sativa cv. Sang reference genome' by Nikos Tsardakas Renhuldt. SI.pdf contains supplementary figures 1-3. Supplementary figure 4.html contains supplementary figure 4. Supplementary tables.xlsx contains supplementary tables 1-5.

This is the supplementary information of the manuscript 'Mutation in SHAGGY-like kinase AsGSK2.1 causes a short kernel phenotype in oat (Avena sativa)' published as a part of the thesis 'Annotating and making use of the Avena sativa cv. Sang reference genome' by Nikos Tsardakas Renhuldt. SI.pdf contains supplementary figures 1-3. Supplementary figure 4.html contains supplementary figure 4. Supplementary tables.xlsx contains supplementary tables 1-5.

Genotype data information used in the analysis of 192 great tit (Parus major) from 9 pairs of urban and rural (forest) populations across Europe, incl. Barcelona (n=10/10), Glasgow (n=10/10), Gothenburg (n=10/10), Lisbon (n=10/10), Madrid (n=10/10), Malmö (n=16/16), Milan (n=10/10), Munich (n=10/10) and Paris (n=10/10). The reference genome used for the chromosome annotation was the great tit genome build 1.1 (Annotation release ID 101; "GCA_001522545.2"). Refer to publication below for full methodologies and ethics approval. Salmón P., Jacobs A., Ahrén D., Biard C., Dingemanse N. J., Dominoni D. M., Helm B., Lundberg M., Senar J. C., Sprau P., Visser M. E. and Isaksson C. 2021. Continent-wide genomic signatures of adaptation to urbanisation in a songbird across Europe. Nature Communications.

Genotype data information used in the analysis of 192 great tit (Parus major) from 9 pairs of urban and rural (forest) populations across Europe, incl. Barcelona (n=10/10), Glasgow (n=10/10), Gothenburg (n=10/10), Lisbon (n=10/10), Madrid (n=10/10), Malmö (n=16/16), Milan (n=10/10), Munich (n=10/10) and Paris (n=10/10). The reference genome used for the chromosome annotation was the great tit genome build 1.1 (Annotation release ID 101; "GCA_001522545.2"). Refer to publication below for full methodologies and ethics approval. Salmón P., Jacobs A., Ahrén D., Biard C., Dingemanse N. J., Dominoni D. M., Helm B., Lundberg M., Senar J. C., Sprau P., Visser M. E. and Isaksson C. 2021. Continent-wide genomic signatures of adaptation to urbanisation in a songbird across Europe. Nature Communications.