Automated Author Profile

Perez-Garcia, Javier

Genomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics, Universidad de La Laguna, San Cristóbal de La Laguna, Tenerife, Spain

Current S-Index

1.1

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.4

Average Dataset Index per dataset

Total Datasets

3

Total datasets for this author

Average FAIR Score

62.8%

Average FAIR Score per dataset

Total Citations

0

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

EWAS of lung function in Latinos with asthma - Summary Statistics

Summary statistics generated for the manuscript entitled "Epigenome-wide association study of lung function in Latino children and youth with asthma" Our aim was to identify DNA methylation signals associated with lung function in Latino youth with asthma and validate previous epigenetic signals from non-Latino populations. For that, we performed multiple epigenome-wide association studies (EWAS) of lung function measurements analyzing whole blood from 250 Puerto Rican (PR) and 148 Mexican American (MEX) youth with asthma from the Genes-Environment and Admixture in Latino Americans (GALA II) study. The following measurements were evaluated Pre- and post- albuterol administration: Forced expiratory volume in one second (FEV1.Meas), forced vital capacity (FVC.Meas) and their ratio (FEV1.FVC.Meas). DNA methylation was profiled with the Infinium EPIC BeadChip or the Infinium HumanMethylation450 BeadChip array (Illumina, San Diego, CA, USA). The association of methylation beta-values and raw PFT values (in liters) was tested by robust linear regressions with correction for age, sex, height, the first three genotype principal components (PCs), in utero maternal smoking exposure, the first six ReFACTor components, and batch, when appropriate, via limma R package. The results for individuals of the same ethnic subgroup were meta-analyzed using fixed- or random-effects models, based on Cochran's Q p-value. Version 1 is deprecated. The EWAS result files (*.txt) contains: RSID: CpG name. STUDY: Number of sets of individuals included in the meta-analysis. BETA_meta: Coefficient of the regression. SEBETA_meta: Standard error of the coefficient of the regression. PVALUE_meta: P-value for the association. PVALUE_Q: Cochran's Q p-value. Model: Fixed-effect (FE) or Random-effects (RE2) model. PVALUE_meta_adj: False discovery rate (Benjamini & Hochberg method).

Authors

  • Herrera-Luis, Esther ;
  • Li, Annie ;
  • Mak, Angel C. Y. ;
  • Perez-Garcia, Javier ;
  • Elhawary, Jennifer R. ;
  • Oh, Sam S. ;
  • Hu, Donglei ;
  • Eng, Celeste ;
  • Keys, Kevin L. ;
  • Huntsman, Scott ;
  • Beckman, Kenneth B. ;
  • Borrell, Luisa N. ;
  • Rodriguez-Santana, Jose ;
  • Burchard, Esteban G. ;
  • Pino-Yanes, Maria
0 Citations0 Mentions54% FAIR0.3 Dataset Index
10.5281/zenodo.52366682021

EWAS of lung function in Latinos with asthma - Summary Statistics

Summary statistics generated for the manuscript entitled "Epigenome-wide association study of lung function in Latino children and youth with asthma" Our aim was to identify DNA methylation signals associated with lung function in Latino youth with asthma and validate previous epigenetic signals from non-Latino populations. For that, we performed multiple epigenome-wide association studies (EWAS) of lung function measurements analyzing whole blood from 250 Puerto Rican (PR) and 148 Mexican American (MEX) youth with asthma from the Genes-Environment and Admixture in Latino Americans (GALA II) study. The following measurements were evaluated Pre- and post- albuterol administration: Forced expiratory volume in one second (FEV1.Meas), forced vital capacity (FVC.Meas) and their ratio (FEV1.FVC.Meas). DNA methylation was profiled with the Infinium EPIC BeadChip or the Infinium HumanMethylation450 BeadChip array (Illumina, San Diego, CA, USA). The association of methylation beta-values and raw PFT values (in liters) was tested by robust linear regressions with correction for age, sex, height, the first three genotype principal components (PCs), in utero maternal smoking exposure, the first six ReFACTor components, and batch, when appropriate, via limma R package. The results for individuals of the same ethnic subgroup were meta-analyzed using fixed- or random-effects models, based on Cochran's Q p-value. Version 1 is deprecated. The EWAS result files (*.txt) contains: RSID: CpG name. STUDY: Number of sets of individuals included in the meta-analysis. BETA_meta: Coefficient of the regression. SEBETA_meta: Standard error of the coefficient of the regression. PVALUE_meta: P-value for the association. PVALUE_Q: Cochran's Q p-value. Model: Fixed-effect (FE) or Random-effects (RE2) model. PVALUE_meta_adj: False discovery rate (Benjamini & Hochberg method).

Authors

  • Herrera-Luis, Esther ;
  • Li, Annie ;
  • Mak, Angel C. Y. ;
  • Perez-Garcia, Javier ;
  • Elhawary, Jennifer R. ;
  • Oh, Sam S. ;
  • Hu, Donglei ;
  • Eng, Celeste ;
  • Keys, Kevin L. ;
  • Huntsman, Scott ;
  • Beckman, Kenneth B. ;
  • Borrell, Luisa N. ;
  • Rodriguez-Santana, Jose ;
  • Burchard, Esteban G. ;
  • Pino-Yanes, Maria
0 Citations0 Mentions54% FAIR0.3 Dataset Index
10.5281/zenodo.52366672021

EWAS of lung function in Latinos with asthma - Summary Statistics

Summary statistics generated for the manuscript entitled "Epigenome-wide association study of lung function in Latino children and youth with asthma"Our aim was to identify DNA methylation signals associated with lung function in Latino youth with asthma and validate previous epigenetic signals from non-Latino populations. For that, we performed multiple epigenome-wide association studies (EWAS) of lung function measurements analyzing whole blood from 250 Puerto Rican (PR) and 148 Mexican American (MEX) youth with asthma from the Genes-Environment and Admixture in Latino Americans (GALA II) study. The following measurements were evaluated Pre- and post- albuterol administration: Forced expiratory volume in one second (FEV1.Meas), forced vital capacity (FVC.Meas) and their ratio (FEV1.FVC.Meas). DNA methylation was profiled with the Infinium EPIC BeadChip or the Infinium HumanMethylation450 BeadChip array (Illumina, San Diego, CA, USA).  The association of methylation beta-values and raw PFT values (in liters) was tested by robust linear regressions with correction for age, sex, height, the first three genotype principal components (PCs), in utero maternal smoking exposure, the first six ReFACTor components, and batch, when appropriate, via limma R package. The results for individuals of the same ethnic subgroup were meta-analyzed using fixed- or random-effects models, based on Cochran's Q p-value. Version 1 is deprecated.The EWAS result files (*.txt) contains:RSID: CpG name.STUDY: Number of sets of individuals included in the meta-analysis.BETA_meta: Coefficient of the regression.SEBETA_meta: Standard error of the coefficient of the regression.PVALUE_meta: P-value for the association.PVALUE_Q: Cochran's Q p-value.Model: Fixed-effect (FE) or Random-effects (RE2) model.PVALUE_meta_adj: False discovery rate (Benjamini & Hochberg method).

Authors

  • Herrera-Luis, Esther ;
  • Li, Annie ;
  • Mak, Angel C. Y. ;
  • Perez-Garcia, Javier ;
  • Elhawary, Jennifer R. ;
  • Oh, Sam S. ;
  • Hu, Donglei ;
  • Eng, Celeste ;
  • Keys, Kevin L. ;
  • Huntsman, Scott ;
  • Beckman, Kenneth B. ;
  • Borrell, Luisa N. ;
  • Rodriguez-Santana, Jose ;
  • Burchard, Esteban G. ;
  • Pino-Yanes, Maria
0 Citations0 Mentions81% FAIR0.5 Dataset Index
10.5281/zenodo.59880722021