Automated Author ProfileBernatchez, Louis
Bernatchez, Louis
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 2.9 (sum of 10 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
Table S1- Overview of samples sizes used for the different analyses. Table S2- Adjusted p-values from the univariate analysis of the compounds quantified in adults and perceived by females. Table S3- Retention indices and tentative compound identification of the compounds quantified in adults and perceived by females. Table S4- Extended information on mapped odorant receptors, gustatory receptors, and odorant binding proteins.
Authors
- Enge, Swantje ;
- Mérot, Claire ;
- Mozūraitis, Raimondas ;
- Apšegaitė, Violeta ;
- Bernatchez, Louis ;
- Martens, Gerrit A. ;
- Radžiutė, Sandra ;
- Pavia, Henrik ;
- Berdan, Emma L.
Nucleotide variants were called using GATK version 3.8 with the coho salmon RefSeq genome assembly GCF_002021735.2 (GenBank assembly accession GCA_002021735.2). Samples were from the following NCBI BioProjects: PRJNA401427 and PRJNA808051.
Authors
- Rondeau, Eric B. ;
- Christensen, Kris A. ;
- Minkley, David R. ;
- S. Leong, Jong ;
- Chan, Michelle T.T. ;
- Despins, Cody A. ;
- Mueller, Anita ;
- Sakhrani, Dionne ;
- A. Biagi, Carlo ;
- Rougemont, Quentin ;
- Normandeau, Eric ;
- Jones, Steven J.M. ;
- Devlin, Robert H. ;
- E. Withler, Ruth ;
- Beacham, Terry D. ;
- A. Naish, Kerry ;
- Yáñez, José M. ;
- Neira, Roberto ;
- Bernatchez, Louis ;
- S. Davidson, William ;
- Koop, Ben F.
#DESCRIBING DATA FOR: "Environmental selection, rather than neutral processes, best explain patterns of diversity in a tropical rainforest fish"
#AUTHORS: Katie Gates, Jonathan Sandoval-Castillo, Chris J. Brauer, Peter J. Unmack, Martin Laporte, Louis Bernatchez, Luciano B. Beheregaray
#CORRESPONDENCE: Luciano Beheregaray ([email protected])
##DATA FILES:
#1: "MSSplendida_Sampling_And_Environmental_Data.csv" - Comma-delimited spreadsheet containing location-specific sampling and environmental data for Melanotaenia splendida splendida* - Fields include: Date (sampling date) Location (sampling location) Code (sampling location code used for individual IDs in other data files) Catchment (river drainage of sampling location) Latitude (latitude of sampling location) Longitude (longitude of sampling location) Collected n (sample size of collected individuals) Final n (DNA) (sample size of final SNP dataset) Final n (Morpho) (sample size of final morphometric dataset) Final n (GxPxE) (sample size of overlapping datasets used for genotype x phenotype x environment analysis) STRANNTEMP (average annual mean temperature (decrees celsius)) STRANNRAIN (average annual mean rainfall (mm)) RUNSUMMERMEAN (average summer mean runoff (ML)) RDI (river disturbance index (index: 0-1)) ASPECT (stream segment aspect (degrees)) STRDENSITY (stream density; total length of upstream segments calculated for the segment pour-point (km/km^2))
*NOTE: Additional metadata describing the environmental data can be accessed at http://www.ga.gov.au/scientific-topics/water/national-surface-water-information
#2: "MSSplendida_Full_SNP_Dataset.vcf" - VCF file containing the 14,540 SNP genotypes identified for 210 Melanotaenia splendida splendida individuals, used as a basis for all downstream genomic analyses - A description of data fields can be accessed at https://samtools.github.io/hts-specs/VCFv4.2.pdf
#3: "MSSplendida_Morphometric_Landmarks_And_Size.csv" - Comma-delimited spreadsheet containing coordinates (x,y) for 18 morphometric landmarks, as well as centroid size, for individuals used in geometric morphometric and GxPxE analyses
##CODE:
#1: "RDA_GEA" - Folder containing R code and input files for genotype-environment association (GEA) RDA
#2: "RDA_PEA" - Folder containing R code and input files for phenotype-environment association (PEA) RDA
#3: "RDA_GxPxE" - Folder containing R code and input files for genotype-phenotype-environment association (GxPxE) RDA
Authors
- Gates, Katie ;
- Sandoval, Jonathan ;
- Brauer, Chris ;
- Unmack, Peter ;
- Laporte, Martin ;
- Bernatchez, Louis ;
- B. Beheregaray, Luciano
#DESCRIBING DATA FOR: "Environmental selection, rather than neutral processes, best explain patterns of diversity in a tropical rainforest fish"
#AUTHORS: Katie Gates, Jonathan Sandoval-Castillo, Chris J. Brauer, Peter J. Unmack, Martin Laporte, Louis Bernatchez, Luciano B. Beheregaray
#CORRESPONDENCE: Luciano Beheregaray ([email protected])
##DATA FILES:
#1: "MSSplendida_Sampling_And_Environmental_Data.csv" - Comma-delimited spreadsheet containing location-specific sampling and environmental data for Melanotaenia splendida splendida* - Fields include: Date (sampling date) Location (sampling location) Code (sampling location code used for individual IDs in other data files) Catchment (river drainage of sampling location) Latitude (latitude of sampling location) Longitude (longitude of sampling location) Collected n (sample size of collected individuals) Final n (DNA) (sample size of final SNP dataset) Final n (Morpho) (sample size of final morphometric dataset) Final n (GxPxE) (sample size of overlapping datasets used for genotype x phenotype x environment analysis) STRANNTEMP (average annual mean temperature (decrees celsius)) STRANNRAIN (average annual mean rainfall (mm)) RUNSUMMERMEAN (average summer mean runoff (ML)) RDI (river disturbance index (index: 0-1)) ASPECT (stream segment aspect (degrees)) STRDENSITY (stream density; total length of upstream segments calculated for the segment pour-point (km/km^2))
*NOTE: Additional metadata describing the environmental data can be accessed at http://www.ga.gov.au/scientific-topics/water/national-surface-water-information
#2: "MSSplendida_Full_SNP_Dataset.vcf" - VCF file containing the 14,540 SNP genotypes identified for 210 Melanotaenia splendida splendida individuals, used as a basis for all downstream genomic analyses - A description of data fields can be accessed at https://samtools.github.io/hts-specs/VCFv4.2.pdf
#3: "MSSplendida_Morphometric_Landmarks_And_Size.csv" - Comma-delimited spreadsheet containing coordinates (x,y) for 18 morphometric landmarks, as well as centroid size, for individuals used in geometric morphometric and GxPxE analyses
##CODE:
#1: "RDA_GEA" - Folder containing R code and input files for genotype-environment association (GEA) RDA
#2: "RDA_PEA" - Folder containing R code and input files for phenotype-environment association (PEA) RDA
#3: "RDA_GxPxE" - Folder containing R code and input files for genotype-phenotype-environment association (GxPxE) RDA
Authors
- Bernatchez, Louis ;
- B. Beheregaray, Luciano ;
- Gates, Katie ;
- Sandoval, Jonathan ;
- Brauer, Chris ;
- Unmack, Peter ;
- Laporte, Martin
Table S1- Overview of samples sizes used for the different analyses. Table S2- Adjusted p-values from the univariate analysis of the compounds quantified in adults and perceived by females. Table S3- Retention indices and tentative compound identification of the compounds quantified in adults and perceived by females. Table S4- Extended information on mapped odorant receptors, gustatory receptors, and odorant binding proteins.
Authors
- Enge, Swantje ;
- Mérot, Claire ;
- Mozūraitis, Raimondas ;
- Apšegaitė, Violeta ;
- Bernatchez, Louis ;
- Martens, Gerrit A. ;
- Radžiutė, Sandra ;
- Pavia, Henrik ;
- Berdan, Emma L.
Nucleotide variants were called using GATK version 3.8 with the coho salmon RefSeq genome assembly GCF_002021735.2 (GenBank assembly accession GCA_002021735.2). Samples were from the following NCBI BioProjects: PRJNA401427 and PRJNA808051.
Authors
- Rondeau, Eric B. ;
- Christensen, Kris A. ;
- Minkley, David R. ;
- S. Leong, Jong ;
- Chan, Michelle T.T. ;
- Despins, Cody A. ;
- Mueller, Anita ;
- Sakhrani, Dionne ;
- A. Biagi, Carlo ;
- Rougemont, Quentin ;
- Normandeau, Eric ;
- Jones, Steven J.M. ;
- Devlin, Robert H. ;
- E. Withler, Ruth ;
- Beacham, Terry D. ;
- A. Naish, Kerry ;
- Yáñez, José M. ;
- Neira, Roberto ;
- Bernatchez, Louis ;
- S. Davidson, William ;
- Koop, Ben F.
DMR position and gene annotation information
Authors
- Venney, Clare J. ;
- Wellband, Kyle W. ;
- Normandeau, Eric ;
- Houle, Carolyne ;
- Garant, Dany ;
- Audet, Céline ;
- Bernatchez, Louis
DMR position and gene annotation information
Authors
- Venney, Clare J. ;
- Wellband, Kyle W. ;
- Normandeau, Eric ;
- Houle, Carolyne ;
- Garant, Dany ;
- Audet, Céline ;
- Bernatchez, Louis
Msplendidatatei.vcf contain information about 20,254 high quality unlinked SNPs for 351 samples and 15 replicates
Authors
- Attard, Catherine R.M. ;
- Sandoval, Jonathan ;
- Brauer, Chris ;
- Unmack, Peter ;
- Schmarr, David ;
- Bernatchez, Louis ;
- B. Beheregaray, Luciano
Msplendidatatei.vcf contain information about 20,254 high quality unlinked SNPs for 351 samples and 15 replicates
Authors
- Attard, Catherine R.M. ;
- Sandoval, Jonathan ;
- Brauer, Chris ;
- Unmack, Peter ;
- Schmarr, David ;
- Bernatchez, Louis ;
- B. Beheregaray, Luciano