Automated Author Profile

Kärenlampi, Sirpa, O.

Current S-Index

0.7

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.7

Average Dataset Index per dataset

Total Datasets

1

Total datasets for this author

Average FAIR Score

30.8%

Average FAIR Score per dataset

Total Citations

1

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Supporting data for "Improved chromosome level genome assembly of the Glanville fritillary butterfly (<i>Melitaea cinxia</i>) based on SMRT Sequencing and linkage map."

The Glanville fritillary (Melitaea cinxia) butterfly is a model system for metapopulation dynamics research in fragmented landscapes. Here, we provide a chromosome level assembly of the butterflys genome produced from Pacific Biosciences sequencing of a pool of males, combined with a linkage map from population crosses. The final assembly size of 484 Mb is an increase of 94 Mb on the previously published genome. Estimation of the completeness of the genome with Benchmarking Universal Single-Copy Orthologs (BUSCO) indicates that the genome contains 93 - 95% of the BUSCO genes in complete and single copies. We predicted 14,810 genes using the MAKER pipeline and manually curated 1,232 of these gene models. The genome and its annotated gene models are a valuable resource for future comparative genomics, molecular biology, transcriptome and genetics studies on this species.

Authors

  • Kahilainen, Aapo ;
  • Smolander, Olli-Pekka ;
  • Blande, Daniel ;
  • Ahola, Virpi ;
  • Rastas, Pasi ;
  • Tanskanen, Jaakko ;
  • Kammonen, Juhana, I. ;
  • Oostra, Vicencio ;
  • Pellegrini, Lorenzo ;
  • Ikonen, Suvi ;
  • Dallas, Tad ;
  • DiLeo, Michelle, F. ;
  • Duplouy, Anne ;
  • Duru, Ilhan, Cem ;
  • Halimaa, Pauliina ;
  • Kuwar, Suyog, S. ;
  • Kärenlampi, Sirpa, O. ;
  • Lafuente, Elvira ;
  • Luo, Shiqi ;
  • Makkonen, Jenny ;
  • Nair, Abhilash ;
  • la Paz Celorio-Mancera, Maria, de ;
  • Pennanen, Ville ;
  • Ruokolainen, Annukka ;
  • Sundell, Tarja ;
  • Tervahauta, Arja, I ;
  • Twort, Victoria ;
  • Bergen, Erik, van ;
  • Österman-Udd, Janina ;
  • Paulin, Lars ;
  • Frilander, Mikko, J ;
  • Auvinen, Petri ;
  • Saastamoinen, Marjo
1 Citation0 Mentions31% FAIR0.7 Dataset Index
10.5524/100915January 2021