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Automated Author Profile

Dirks, Ron P.

0000-0003-4698-6170

Current S-Index

6.4

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.5

Average Dataset Index per dataset

Total Datasets

13

Total datasets for this author

Average FAIR Score

13.5%

Average FAIR Score per dataset

Total Citations

9

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

<i>Rauvolfia tetraphylla</i> chromosome-scale genome to complete the ajmaline biosynthetic pathway

Rauvolfia_tetraphylla_v2.0.transcripts (Predicted transcripts)
Rauvolfia_tetraphylla_v2.0.cds (Predicted CDS)
Rauvolfia_tetraphylla_v2.0.gff3 (Genome annotation file (GFF))
Rauvolfia_tetraphylla_v2.0.pep (Predicted proteins)
Rauvolfia_tetraphylla_genome_v2.0.fasta (Genome)
Rauvolfia_tetraphylla_v2.0_Trinotate.xls (Gene functional annotation)

Authors

  • Lezin, Enzo ;
  • Carqueijeiro, Ines ;
  • CUELLO, Clément ;
  • Durand, Mickaël ;
  • Jansen, Hans J. ;
  • Vergès, Valentin ;
  • Birer-Williams, Caroline ;
  • Oudin, Audrey ;
  • Dugé de Bernonville, Thomas ;
  • Petrignet, Julien ;
  • Celton, Noémie ;
  • St-Pierre, Benoit ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • O'Connor, Sarah Ellen ;
  • Jensen, Michael Krogh ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.21679628January 2024

Datasets for <em>Pachypodium lamerei</em>, <em>Apocynum venetum</em>, <em>Asclepias syriaca</em> and <em>Calotropis procera</em> genomes

Dataset for Pachypodium lamerei genome- Genome (Pachypodium_lamerei_genome*.fasta)- Predicted transcripts (Pachypodium_lamerei_v1.0.transcripts)- Predicted coding sequences (Pachypodium_lamerei_v1.0.cds)- Predicted proteins (Pachypodium_lamerei_v1.0.pep)- Genome annotation file (Pachypodium_lamerei_v1.0.gtf)- Gene functional annotation (Pachypodium_lamerei_Trinotate.xls)Dataset for Apocynum venetum genome- Genome (Apocynum_venetum_GCA_019593545.1.fna)- Predicted transcripts (Apocynum_venetum.transcripts)- Predicted coding sequences (Apocynum_venetum.cds)- Predicted proteins (Apocynum_venetum.pep)- Genome annotation file (Apocynum_venetum_v1.0_UT.gtf)- Gene functional annotation (Apocynum_venetum_Trinotate.xls)Dataset for Asclepias syriaca genome- Genome (Asclepias_syriaca_GCA_027405835.1.fna)- Predicted transcripts (Asclepias_syriaca.transcripts)- Predicted coding sequences (Asclepias_syriaca.cds)- Predicted proteins (Asclepias_syriaca.pep)- Genome annotation file (Asclepias_syriaca_UT.gtf)- Gene functional annotation (Asclepias_syriaca_Trinotate.xls)Dataset for Calotropis procera genome- Genome (Calotropis_procera_GCA_004801955.1.fna)- Predicted transcripts (Calotropis_procera.transcripts)- Predicted coding sequences (Calotropis_procera.cds)- Predicted proteins (Calotropis_procera.pep)- Genome annotation file (Calotropis_procera_UT.gtf)- Gene functional annotation (Calotropis_procera_Trinotate.xls)Database containing functionally characterized proteins involved in shikimate, methyl erythritol phosphate (MEP), iridoid and MIA pathways (MIA_db.pep)

Authors

  • CUELLO, Clément ;
  • Jansen, Hans J. ;
  • Abdallah, Cécile ;
  • Zamar, Duchesse-Lacours ;
  • Birer-Williams, Caroline ;
  • Durand, Mickaël ;
  • Oudin, Audrey ;
  • Papon, Nicolas ;
  • Giglioli-Guivarc'h, Nathalie ;
  • Dirks, Ron P. ;
  • Jensen, Michael Krogh ;
  • O'Connor, Sarah Ellen ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.23126816.v1January 2024

<i>Rauvolfia tetraphylla</i> chromosome-scale genome to complete the ajmaline biosynthetic pathway

Rauvolfia_tetraphylla_v2.0.transcripts (Predicted transcripts)
Rauvolfia_tetraphylla_v2.0.cds (Predicted CDS)
Rauvolfia_tetraphylla_v2.0.gff3 (Genome annotation file (GFF))
Rauvolfia_tetraphylla_v2.0.pep (Predicted proteins)
Rauvolfia_tetraphylla_genome_v2.0.fasta (Genome)
Rauvolfia_tetraphylla_v2.0_Trinotate.xls (Gene functional annotation)

Authors

  • Lezin, Enzo ;
  • Carqueijeiro, Ines ;
  • CUELLO, Clément ;
  • Durand, Mickaël ;
  • Jansen, Hans J. ;
  • Vergès, Valentin ;
  • Birer-Williams, Caroline ;
  • Oudin, Audrey ;
  • Dugé de Bernonville, Thomas ;
  • Petrignet, Julien ;
  • Celton, Noémie ;
  • St-Pierre, Benoit ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • O'Connor, Sarah Ellen ;
  • Jensen, Michael Krogh ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.21679628.v1January 2024

Datasets for <em>Pachypodium lamerei</em>, <em>Apocynum venetum</em>, <em>Asclepias syriaca</em> and <em>Calotropis procera</em> genomes

Dataset for Pachypodium lamerei genome- Genome (Pachypodium_lamerei_genome*.fasta)- Predicted transcripts (Pachypodium_lamerei_v1.0.transcripts)- Predicted coding sequences (Pachypodium_lamerei_v1.0.cds)- Predicted proteins (Pachypodium_lamerei_v1.0.pep)- Genome annotation file (Pachypodium_lamerei_v1.0.gtf)- Gene functional annotation (Pachypodium_lamerei_Trinotate.xls)Dataset for Apocynum venetum genome- Genome (Apocynum_venetum_GCA_019593545.1.fna)- Predicted transcripts (Apocynum_venetum.transcripts)- Predicted coding sequences (Apocynum_venetum.cds)- Predicted proteins (Apocynum_venetum.pep)- Genome annotation file (Apocynum_venetum_v1.0_UT.gtf)- Gene functional annotation (Apocynum_venetum_Trinotate.xls)Dataset for Asclepias syriaca genome- Genome (Asclepias_syriaca_GCA_027405835.1.fna)- Predicted transcripts (Asclepias_syriaca.transcripts)- Predicted coding sequences (Asclepias_syriaca.cds)- Predicted proteins (Asclepias_syriaca.pep)- Genome annotation file (Asclepias_syriaca_UT.gtf)- Gene functional annotation (Asclepias_syriaca_Trinotate.xls)Dataset for Calotropis procera genome- Genome (Calotropis_procera_GCA_004801955.1.fna)- Predicted transcripts (Calotropis_procera.transcripts)- Predicted coding sequences (Calotropis_procera.cds)- Predicted proteins (Calotropis_procera.pep)- Genome annotation file (Calotropis_procera_UT.gtf)- Gene functional annotation (Calotropis_procera_Trinotate.xls)Database containing functionally characterized proteins involved in shikimate, methyl erythritol phosphate (MEP), iridoid and MIA pathways (MIA_db.pep)

Authors

  • CUELLO, Clément ;
  • Jansen, Hans J. ;
  • Abdallah, Cécile ;
  • Zamar, Duchesse-Lacours ;
  • Birer-Williams, Caroline ;
  • Durand, Mickaël ;
  • Oudin, Audrey ;
  • Papon, Nicolas ;
  • Giglioli-Guivarc'h, Nathalie ;
  • Dirks, Ron P. ;
  • Jensen, Michael Krogh ;
  • O'Connor, Sarah Ellen ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.23126816January 2024

The <i>Rauvolfia tetraphylla</i> genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids

Rauvolfia_tetraphylla_v1.1.transcripts (Predicted transcripts)
Rauvolfia_tetraphylla_v1.1.cds (Predicted CDS)
Rauvolfia_tetraphylla_v1.1.gff (Genome annotation file (GFF))
Rauvolfia_tetraphylla_v1.1.pep (Predicted proteins)
Rauvolfia_tetraphylla_genome_v1.0_2019_Oct_27.fasta (Genome)
Rauvolfia_tetraphylla_Trinotate.xls (Gene functional annotation) Rauvolfia_tetraphylla_TPM.csv  (transcript relative expression matrix (TPM)

Authors

  • Stander, Emily ;
  • Carqueijeiro, Ines ;
  • CUELLO, Clément ;
  • Jansen, Hans J ;
  • Dugé de Bernonville, Thomas ;
  • Birer-Williams, Caroline ;
  • Vergès, Valentin ;
  • Lezin, Enzo ;
  • Daniel Brandbjerg Bohn LORENSEN, Marcus ;
  • Dang, Thu-Thuy ;
  • Oudin, Audrey ;
  • Lanoue, Arnaud ;
  • Durand, Michael ;
  • Giglioli-Guivarc'h, Nathalie ;
  • Janfelt, Christian ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • O'Connor, Sarah E. ;
  • Jensen, Michael Krogh ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.21679601January 2023

The <i>Rauvolfia tetraphylla</i> genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids

Rauvolfia_tetraphylla_v1.1.transcripts (Predicted transcripts)
Rauvolfia_tetraphylla_v1.1.cds (Predicted CDS)
Rauvolfia_tetraphylla_v1.1.gff (Genome annotation file (GFF))
Rauvolfia_tetraphylla_v1.1.pep (Predicted proteins)
Rauvolfia_tetraphylla_genome_v1.0_2019_Oct_27.fasta (Genome)
Rauvolfia_tetraphylla_Trinotate.xls (Gene functional annotation) Rauvolfia_tetraphylla_TPM.csv  (transcript relative expression matrix (TPM)

Authors

  • Stander, Emily ;
  • Carqueijeiro, Ines ;
  • CUELLO, Clément ;
  • Jansen, Hans J ;
  • Dugé de Bernonville, Thomas ;
  • Birer-Williams, Caroline ;
  • Vergès, Valentin ;
  • Lezin, Enzo ;
  • Daniel Brandbjerg Bohn LORENSEN, Marcus ;
  • Dang, Thu-Thuy ;
  • Oudin, Audrey ;
  • Lanoue, Arnaud ;
  • Durand, Michael ;
  • Giglioli-Guivarc'h, Nathalie ;
  • Janfelt, Christian ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • O'Connor, Sarah E. ;
  • Jensen, Michael Krogh ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.21679601.v1January 2023

Genome assembly of the medicinal plant Voacanga thouarsii

Voacanga thouarsii transcript sequences (Voacanga_thouarsii_transcripts.fasta) and protein sequences (Voacanga_thouarsii_proteins.fasta)

Authors

  • CUELLO, Clément ;
  • Stander, Emily ;
  • Jansen, Hans J. ;
  • de Bernonville, Thomas Dugé ;
  • Lanoue, Arnaud ;
  • Giglioli-Guivarc’h, Nathalie ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • Jensen, Michael Krogh ;
  • O'Connor, Sarah ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.20223093January 2022

An updated version of the Madagascar periwinkle genome

Catharanthus_roseus_v2.1_UT.cds (Predicted CDS). Catharanthus_roseus_v2.1_UT.gff (Genome annotation file (GFF)). Catharanthus_roseus_v2.1_UT.pep (Predicted proteins). Catharanthus_roseus_v2.1_UT.tr (Predicted transcripts). Cuello et al - F1000R - SuppMat.xlsx (Supplementary tables).

Authors

  • CUELLO, Clément ;
  • Stander, Emily ;
  • Jansen, Hans J. ;
  • de Bernonville, Thomas Dugé ;
  • Oudin, Audrey ;
  • Birer-Williams, Caroline ;
  • Lanoue, Arnaud ;
  • Giglioli-Guivarc’h, Nathalie ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • Jensen, Michael Krogh ;
  • O'Connor, Sarah ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
2 Citations0 Mentions13% FAIR1.1 Dataset Index
10.6084/m9.figshare.21641111January 2022

An updated version of the Madagascar periwinkle genome

Catharanthus_roseus_v2.1_UT.cds (Predicted CDS). Catharanthus_roseus_v2.1_UT.gff (Genome annotation file (GFF)). Catharanthus_roseus_v2.1_UT.pep (Predicted proteins). Catharanthus_roseus_v2.1_UT.tr (Predicted transcripts). Cuello et al - F1000R - SuppMat.xlsx (Supplementary tables).

Authors

  • CUELLO, Clément ;
  • Stander, Emily ;
  • Jansen, Hans J. ;
  • de Bernonville, Thomas Dugé ;
  • Oudin, Audrey ;
  • Birer-Williams, Caroline ;
  • Lanoue, Arnaud ;
  • Giglioli-Guivarc’h, Nathalie ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • Jensen, Michael Krogh ;
  • O'Connor, Sarah ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.21641111.v2January 2022

Genome assembly of the medicinal plant Voacanga thouarsii

Voacanga thouarsii transcript sequences (Voacanga_thouarsii_transcripts.fasta) and protein sequences (Voacanga_thouarsii_proteins.fasta)

Authors

  • CUELLO, Clément ;
  • Stander, Emily ;
  • Jansen, Hans J. ;
  • de Bernonville, Thomas Dugé ;
  • Lanoue, Arnaud ;
  • Giglioli-Guivarc’h, Nathalie ;
  • Papon, Nicolas ;
  • Dirks, Ron P. ;
  • Jensen, Michael Krogh ;
  • O'Connor, Sarah ;
  • Besseau, Sébastien ;
  • Courdavault, Vincent
1 Citation0 Mentions13% FAIR0.6 Dataset Index
10.6084/m9.figshare.20223093.v1January 2022