Automated Author ProfileShih, Po Jui
School of Computer Science and Engineering, UNSW Sydney
Shih, Po Jui
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 4.1 (sum of 2 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
This dataset contains the curated nanopore raw signal data in BLOW5 format used to benchmark Hardware Accelerated Read Until (HARU). This dataset was created by using the publicly available datasets: SARS-CoV-2 SP1 (1.382M reads) and NA12878 PromethION subset (500,000 reads). The tarball when extracted will have the following directory structure: haru-data
├── na12878-rfc1
│ ├── blow5-rawsignal
│ │ ├── na12878_dna_0.blow5
│ │ ├── na12878_dna_100.blow5
│ │ ├── na12878_dna_101.blow5
│ │ ├── na12878_dna_102.blow5
│ │ ├── ...
│ └── reference
│ └── rfc1.fa
└── SARS-CoV-2-sp1
├── blow5-rawsignal
│ ├── readgroup0
│ │ ├── reads_0_0.blow5
│ │ ├── reads_0_10.blow5
│ │ ├── reads_0_11.blow5
│ │ ├── reads_0_12.blow5
│ │ ├── ...
│ └── readgroup1
│ ├── reads_1_0.blow5
│ ├── reads_1_10.blow5
│ ├── reads_1_11.blow5
│ ├── ....
└── reference
└── nCoV-2019.reference.fasta nCoV-2019.reference.fasta is the SARS-CoV-2 MN908947.3 reference genome. rfc1.fa is the genomic region hr4:39262456-39391375 extracted from hg38 human genome.
Authors
- Shih, Po Jui ;
- Hassaan Saadat ;
- Parameswaran, Sri ;
- Gamaarachchi, Hasindu
This dataset contains the curated nanopore raw signal data in BLOW5 format used to benchmark Hardware Accelerated Read Until (HARU). This dataset was created by using the publicly available datasets: SARS-CoV-2 SP1 (1.382M reads) and NA12878 PromethION subset (500,000 reads). The tarball when extracted will have the following directory structure: haru-data
├── na12878-rfc1
│ ├── blow5-rawsignal
│ │ ├── na12878_dna_0.blow5
│ │ ├── na12878_dna_100.blow5
│ │ ├── na12878_dna_101.blow5
│ │ ├── na12878_dna_102.blow5
│ │ ├── ...
│ └── reference
│ └── rfc1.fa
└── SARS-CoV-2-sp1
├── blow5-rawsignal
│ ├── readgroup0
│ │ ├── reads_0_0.blow5
│ │ ├── reads_0_10.blow5
│ │ ├── reads_0_11.blow5
│ │ ├── reads_0_12.blow5
│ │ ├── ...
│ └── readgroup1
│ ├── reads_1_0.blow5
│ ├── reads_1_10.blow5
│ ├── reads_1_11.blow5
│ ├── ....
└── reference
└── nCoV-2019.reference.fasta nCoV-2019.reference.fasta is the SARS-CoV-2 MN908947.3 reference genome. rfc1.fa is the genomic region hr4:39262456-39391375 extracted from hg38 human genome.
Authors
- Shih, Po Jui ;
- Hassaan Saadat ;
- Parameswaran, Sri ;
- Gamaarachchi, Hasindu