Automated Author Profile

Fadda, Elisa

University of Southampton

Current S-Index

0.3

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.1

Average Dataset Index per dataset

Total Datasets

2

Total datasets for this author

Average FAIR Score

78.8%

Average FAIR Score per dataset

Total Citations

0

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Predicting glycan structure from tandem mass spectrometry via deep learning

Curated set of LC-MS/MS data from glycomics studies. Used for training and applying CandyCrunch, a deep learning model to predict glycan structure from LC-MS/MS data, described in Urban et al., Nat Methods, 2024 and https://github.com/BojarLab/CandyCrunch.Files:full_dataset.xlsx: Full dataset with all annotated LC-MS/MS glycan spectraX_train.pkl: spectra and metadata from our training sety_train.pkl: labels from our training setX_test.pkl: spectra and metadata from our independent test sety_test.pkl: labels from our independent test setglycans.pkl: glycans in IUPAC-condensed nomenclature in the same order as the label-encoding

Authors

  • Urban, James ;
  • Chunsheng, Jin ;
  • Thomsson, Kristina A. ;
  • Karlsson, Niclas G. ;
  • Ives, Callum M. ;
  • Fadda, Elisa ;
  • Bojar, Daniel
0 Citations0 Mentions79% FAIR0.1 Dataset Index
10.5281/zenodo.79400462024

Predicting glycan structure from tandem mass spectrometry via deep learning

Curated set of LC-MS/MS data from glycomics studies. Used for training and applying CandyCrunch, a deep learning model to predict glycan structure from LC-MS/MS data, described in Urban et al., Nat Methods, 2024 and https://github.com/BojarLab/CandyCrunch.Files:full_dataset.xlsx: Full dataset with all annotated LC-MS/MS glycan spectraX_train.pkl: spectra and metadata from our training sety_train.pkl: labels from our training setX_test.pkl: spectra and metadata from our independent test sety_test.pkl: labels from our independent test setglycans.pkl: glycans in IUPAC-condensed nomenclature in the same order as the label-encoding

Authors

  • Urban, James ;
  • Chunsheng, Jin ;
  • Thomsson, Kristina A. ;
  • Karlsson, Niclas G. ;
  • Ives, Callum M. ;
  • Fadda, Elisa ;
  • Bojar, Daniel
0 Citations0 Mentions79% FAIR0.1 Dataset Index
10.5281/zenodo.109971102024