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Automated Author Profile

Calogero, Lorenzo

Current S-Index

0.7

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.4

Average Dataset Index per dataset

Total Datasets

2

Total datasets for this author

Average FAIR Score

13.5%

Average FAIR Score per dataset

Total Citations

1

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Supporting data for "<i>A single cell RNAseq benchmark experiment embedding "controlled" cancer heterogeneity</i>" manuscript.

A dataset made of 500 cell for each of the 7 cell lines described in GSE243665 was generate using the Shiny App available at http://130.192.212.153:3838/.The dataset was annotated using Homo_sapiens.GRCh38.110.gtf (annotated_BE1500.csv) and clustered using the rCASC function scannoByGtf#clustering (BE1-500/Results/annotated_BE1500/6 folder) is performed using seurat Lovain modularity method, embedded in the rCASC package (Alessandri et al. Gigascience. 2019, PMID: 31494672)command.R describes all the analysis steps.BE1_log2TPM.txt.zip was generated using the data available at https://doi.org/https://doi.org/10.6084/m9.figshare.23284748.v1The comparison with Tian 2019 dataset requires the data available at https://doi.org/10.6084/m9.figshare.23274413.v1The comparison with PC9 scRNA-seq data requires the data available at https://doi.org/10.6084/m9.figshare.23626407.v1


Authors

  • Calogero, Raffaele ;
  • Calogero, Lorenzo
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.24744996January 2023

Supporting data for "<i>A single cell RNAseq benchmark experiment embedding "controlled" cancer heterogeneity</i>" manuscript.

A dataset made of 500 cell for each of the 7 cell lines described in GSE243665 was generate using the Shiny App available at http://130.192.212.153:3838/.The dataset was annotated using Homo_sapiens.GRCh38.110.gtf (annotated_BE1500.csv) and clustered using the rCASC function scannoByGtf#clustering (BE1-500/Results/annotated_BE1500/6 folder) is performed using seurat Lovain modularity method, embedded in the rCASC package (Alessandri et al. Gigascience. 2019, PMID: 31494672)command.R describes all the analysis steps.BE1_log2TPM.txt.zip was generated using the data available at https://doi.org/https://doi.org/10.6084/m9.figshare.23284748.v1The comparison with Tian 2019 dataset requires the data available at https://doi.org/10.6084/m9.figshare.23274413.v1The comparison with PC9 scRNA-seq data requires the data available at https://doi.org/10.6084/m9.figshare.23626407.v1


Authors

  • Calogero, Raffaele ;
  • Calogero, Lorenzo
1 Citation0 Mentions13% FAIR0.6 Dataset Index
10.6084/m9.figshare.24744996.v1January 2023