Automated Author Profile

Fernandes, Joiselle B.

Max Planck Institute for Plant Breeding ResearchUniversity of Cambridge

Current S-Index

3.8

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.2

Average Dataset Index per dataset

Total Datasets

24

Total datasets for this author

Average FAIR Score

13.5%

Average FAIR Score per dataset

Total Citations

0

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Additional file 2 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 2: Table S1. Low-Recombining Zone and Non-Recombining Zone coordinates in the Col-CEN and Ler-HiFi assemblies. With reference to the Col-CEN assembly or the Ler-HiFi assembly, the chromosome length (bp) is given, in addition to the left and right low recombining zone (LRZ) and non-recombining zone (NRZ) boundaries. The start and end of the main CEN178 satellite arrays are also given, for each chromosome.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.25045670January 2024

Additional file 2 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 2: Table S1. Low-Recombining Zone and Non-Recombining Zone coordinates in the Col-CEN and Ler-HiFi assemblies. With reference to the Col-CEN assembly or the Ler-HiFi assembly, the chromosome length (bp) is given, in addition to the left and right low recombining zone (LRZ) and non-recombining zone (NRZ) boundaries. The start and end of the main CEN178 satellite arrays are also given, for each chromosome.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.25045670.v1January 2024

Additional file 6 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 6: Table S2. Recombination and chromatin datasets analyzed in this study. This table provides references for each recombination and chromatin dataset analyzed in this study, which contain links to public databases where the data are available.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670909January 2024

Additional file 6 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 6: Table S2. Recombination and chromatin datasets analyzed in this study. This table provides references for each recombination and chromatin dataset analyzed in this study, which contain links to public databases where the data are available.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670909.v1January 2024

Additional file 8 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 8: Table S3. Genes located within the LRZs and NRZs. The table provides whether genes are located in the LRZ or NRZ, their chromosome and start and end coordinate against the Col-CEN assembly, strand, gene name, TPM values for RNA-seq data generated from leaf or meiocytes [44], and gene annotation information from TAIR.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670915January 2024

Additional file 8 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 8: Table S3. Genes located within the LRZs and NRZs. The table provides whether genes are located in the LRZ or NRZ, their chromosome and start and end coordinate against the Col-CEN assembly, strand, gene name, TPM values for RNA-seq data generated from leaf or meiocytes [44], and gene annotation information from TAIR.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670915.v1January 2024

Additional file 10 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 10: Table S4. CTL3.9 fluorescent data and crossover frequency measurements in Col/Col inbred backgrounds. Crossover frequency measurements derived from fluorescent CTL3.9/++ seed in wild type, cmt3, met1/+ and HEI10 overexpression lines. The “ctrl_1” samples are the control that was used for comparison with met1/+ and HEI10 overexpression lines, while “ctrl_2” were wild type controls for cmt3.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670921January 2024

Additional file 10 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 10: Table S4. CTL3.9 fluorescent data and crossover frequency measurements in Col/Col inbred backgrounds. Crossover frequency measurements derived from fluorescent CTL3.9/++ seed in wild type, cmt3, met1/+ and HEI10 overexpression lines. The “ctrl_1” samples are the control that was used for comparison with met1/+ and HEI10 overexpression lines, while “ctrl_2” were wild type controls for cmt3.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670921.v1January 2024

Additional file 11 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 11: Table S5. CTL3.9 fluorescent data and crossover frequency measurements in Col/Ler hybrid backgrounds. Crossover frequency measurements derived from fluorescent CTL3.9/++ seed in wild type, cmt3, met1/+, HEI10 overexpression and recq4a recq4b lines. The “ctrl_1” is the control that was used for recq4a recq4b, and “ctrl_2” for cmt3, and “ctrl_3” for met1/+ and HEI10 overexpression lines.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670924January 2024

Additional file 11 of Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis

Additional file 11: Table S5. CTL3.9 fluorescent data and crossover frequency measurements in Col/Ler hybrid backgrounds. Crossover frequency measurements derived from fluorescent CTL3.9/++ seed in wild type, cmt3, met1/+, HEI10 overexpression and recq4a recq4b lines. The “ctrl_1” is the control that was used for recq4a recq4b, and “ctrl_2” for cmt3, and “ctrl_3” for met1/+ and HEI10 overexpression lines.

Authors

  • Fernandes, Joiselle B. ;
  • Naish, Matthew ;
  • Lian, Qichao ;
  • Burns, Robin ;
  • Tock, Andrew J. ;
  • Rabanal, Fernando A. ;
  • Wlodzimierz, Piotr ;
  • Habring, Anette ;
  • Nicholas, Robert E. ;
  • Weigel, Detlef ;
  • Mercier, Raphael ;
  • Henderson, Ian R.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.26670924.v1January 2024