Automated Author Profile

Karkala, Faidra

Erasmus MC

Current S-Index

4.0

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.7

Average Dataset Index per dataset

Total Datasets

6

Total datasets for this author

Average FAIR Score

13.5%

Average FAIR Score per dataset

Total Citations

6

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Additional file 2 of Comparative performance evaluation of bisulfite- and enzyme-based DNA conversion methods

Supplementary file 2. R file containing the script to compute the qBiCo indices from qPCR data.

Authors

  • Simons, Roy B. ;
  • Karkala, Faidra ;
  • Kukk, Marta M. ;
  • Adams, Hieab H. H. ;
  • Kayser, Manfred ;
  • Vidaki, Athina
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.28729432January 2025

Additional file 2 of Comparative performance evaluation of bisulfite- and enzyme-based DNA conversion methods

Supplementary file 2. R file containing the script to compute the qBiCo indices from qPCR data.

Authors

  • Simons, Roy B. ;
  • Karkala, Faidra ;
  • Kukk, Marta M. ;
  • Adams, Hieab H. H. ;
  • Kayser, Manfred ;
  • Vidaki, Athina
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.28729432.v1January 2025

Additional file 3 of Comparative performance evaluation of bisulfite- and enzyme-based DNA conversion methods

Supplementary file 3. qBiCo index data tab contains the qBiCo results of each converted sample in duplicate per row. Columns contain the following labels: Sample, Well, Conversion efficiency, DNA concentration, Fragmentation, Experiment, DNA input, Elution volume, Expected concentration, Conversion method and Recovery. Conversion experiment labeled tabs (BC1, EC1, etc.) include the Cq values of each converted sample in duplicate. Columns contain the following labels: Well, Fluor, Target, Sample, Cq, DNA input, Elution volume, Excluded (1 if excluded based on manual curation of qPCR data). The graphs sample list tab shows which samples are used for analysis of each validation parameter. The statistics comparative tests tab contains the results of the comparative statistical tests. The statistics pairwise tests tab contains the results of the pairwise statistical tests.

Authors

  • Simons, Roy B. ;
  • Karkala, Faidra ;
  • Kukk, Marta M. ;
  • Adams, Hieab H. H. ;
  • Kayser, Manfred ;
  • Vidaki, Athina
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.28729435January 2025

Additional file 3 of Comparative performance evaluation of bisulfite- and enzyme-based DNA conversion methods

Supplementary file 3. qBiCo index data tab contains the qBiCo results of each converted sample in duplicate per row. Columns contain the following labels: Sample, Well, Conversion efficiency, DNA concentration, Fragmentation, Experiment, DNA input, Elution volume, Expected concentration, Conversion method and Recovery. Conversion experiment labeled tabs (BC1, EC1, etc.) include the Cq values of each converted sample in duplicate. Columns contain the following labels: Well, Fluor, Target, Sample, Cq, DNA input, Elution volume, Excluded (1 if excluded based on manual curation of qPCR data). The graphs sample list tab shows which samples are used for analysis of each validation parameter. The statistics comparative tests tab contains the results of the comparative statistical tests. The statistics pairwise tests tab contains the results of the pairwise statistical tests.

Authors

  • Simons, Roy B. ;
  • Karkala, Faidra ;
  • Kukk, Marta M. ;
  • Adams, Hieab H. H. ;
  • Kayser, Manfred ;
  • Vidaki, Athina
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.28729435.v1January 2025

Additional file 4 of Comparative performance evaluation of bisulfite- and enzyme-based DNA conversion methods

Supplementary file 4. R file containing the script to perform statistical tests and create figures.

Authors

  • Simons, Roy B. ;
  • Karkala, Faidra ;
  • Kukk, Marta M. ;
  • Adams, Hieab H. H. ;
  • Kayser, Manfred ;
  • Vidaki, Athina
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.28729438January 2025

Additional file 4 of Comparative performance evaluation of bisulfite- and enzyme-based DNA conversion methods

Supplementary file 4. R file containing the script to perform statistical tests and create figures.

Authors

  • Simons, Roy B. ;
  • Karkala, Faidra ;
  • Kukk, Marta M. ;
  • Adams, Hieab H. H. ;
  • Kayser, Manfred ;
  • Vidaki, Athina
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.28729438.v1January 2025