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Automated Author Profile

Thomas, Damien

Université Paris-Saclay, INRAE, FRISE, Antony, 92761, France
0009-0001-6187-2502

Current S-Index

54.9

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.1

Average Dataset Index per dataset

Total Datasets

51

Total datasets for this author

Average FAIR Score

44.7%

Average FAIR Score per dataset

Total Citations

0

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Dynamic Testing and Motion Visualization of fibres during capillary rise using X-ray microCT

This dataset contains time-resolved X-ray micro-CT volumes processed by threshold-based segmentation and ROI extraction, to enable object tracking within large 3D volumes under size constraints. The experiment consists in a yarn of 6 strings, made with hemp fibres. It is fixed in a tube of the tomography holder which allows to add fluid at the base. The tomography was repeated 20 times at the same height and every minutes on the sample after immersing its bottom in water. The goal of this public dataset is to provide code and data that explain how to track the trajectories of fibres. The first step demonstrates how to extract sub-volumes from reconstructed tomographic files, using thresholding and region-of-interest extraction, to obtain the fibre shape using Python code. Once binarized, Paraview scripts are used to gather fibres data at all time steps and identify some ‘recognizable’ fibre in the domain. Connectivity filter allows to build object from ‘adjacent’ cells. The largest objects are kept as ‘recognizable’ fibres, whose movements are represented in figures. The entire process is provided, from raw data extraction to figure generation, in a step-by-step procedure. These time-resolved micro-CT volumes and analysis scripts were designed to monitor the motion of fibres during capillary rise, enabling reproducible 3D tracking of internal structures.

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions88% FAIR2.2 Dataset Index
10.57745/zkk1cc2025

Flecvolinfo.py

Function used in python script

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/tj8nso2025

extractboxforallrawfiles.py

Python script for extracting contrast values and making binarization inside a reduced rectangular box for all time steps

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/bjcjxx2025

Flecimz.py

Function used in python script

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/feilwm2025

paraviewID_0_11.py

Paraview script for producing the vtu file containing all trajectories from time =0 to time=11

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/idxrmt2025

paraviewID_12_19.py

Paraview script for producing the vtu file containing all trajectories from time =12 to time=19

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR0.9 Dataset Index
10.57745/e4f8wb2025

figure_coin.py

Paraview script for producing the figure related to fibre 'coin' trajectory

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/gtvhow2025

assembly.py

Paraview script to assembly box raw files

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/ymhyxv2025

figure_atypique.py

Paraview script for producing the figure related to fibre 'atypique' trajectory

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/jqiv402025

figure_frisoti2.py

Paraview script for producing the figure related to fibre 'frisoti2' trajectory

Authors

  • Lacour, Stéphanie ;
  • Aguié-Béghin, Véronique ;
  • Chabbert, Brigitte ;
  • Thomas, Damien ;
  • Scheel, Mario ;
  • Clain, Pascal
0 Citations0 Mentions42% FAIR1.0 Dataset Index
10.57745/gphwtf2025