Automated Author Profile

Gath, Emily

Current S-Index

0.9

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.9

Average Dataset Index per dataset

Total Datasets

1

Total datasets for this author

Average FAIR Score

88.5%

Average FAIR Score per dataset

Total Citations

1

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

TB PROSPECT - Reference-based chemical-genetic interaction profiling to elucidate small molecule mechanism of action in Mycobacterium tuberculosis

See "Data files-README.md" for description of each data archive (TAR/GZIP). The processed strain inhibition data is located in sGR_reference_set_gsk_brd4310_archive.tar.gz. TB PROSPECT standardized Growth Rate (sGR) scores of 333 hypomorphs and 7 WT H37Rv control strains against each compound-concentration (condition) from a 437 compound reference set with existing, published MOA screened in dose-response, 173 GSK compounds from a publicly released antitubercular collection that were screened blinded and in dose-response, and BRD4310 pre-selected from an unbiased chemical library and screened in dose-response. As described in "Data files-README.md", the other archived data files are inputs or results from the application of our reference-based MOA prediction method, PCL analysis, based on comparing chemical-genetic interaction profiles of test compounds to those of the reference set compounds with annotated MOA. GCTx format is a binary file used to store the scores in matrix format with annotated row and column metadata in a compressed, memory-efficient manner. Code libraries in Matlab (cmapM), Python (cmapPy), and R (cmapR) are publicly available on Github to work with it. The GCT format can be visualized, sorted, and filtered on Morpheus, https://software.broadinstitute.org/morpheus.

Authors

  • Bond, Austin ;
  • Orzechowski, Marek ;
  • Zhang, Shuting ;
  • Ben-Zion, Ishay ;
  • Lemmer, Allison ;
  • Garry, Nathaniel ;
  • Lee, Katie ;
  • Chen, Michael ;
  • Delano, Kayla ;
  • Gath, Emily ;
  • Lorelei Golas, A. ;
  • Nietupski, Raymond ;
  • Fitzgerald, Michael ;
  • Ehrt, Sabine ;
  • Rubin, Eric J. ;
  • Sassetti, Christopher M ;
  • Schnappinger, Dirk ;
  • Shoresh, Noam ;
  • Hunt, Diana ;
  • Gomez, James E. ;
  • Hung, Deborah T.
1 Citation0 Mentions88% FAIR0.9 Dataset Index
10.6084/m9.figshare.28373561.v12025