Automated Author Profile

Brochmann, Christian

Current S-Index

141.7

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.5

Average Dataset Index per dataset

Total Datasets

96

Total datasets for this author

Average FAIR Score

77.8%

Average FAIR Score per dataset

Total Citations

1

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic (Version: 1)

<b>Abstract</b><br/>The Arctic is one of the most extreme terrestrial environments on the planet. Here we present the first complete genome assembly of a plant adapted to the high Arctic, Draba nivalis (Brassicaceae), an attractive model species for studying plant adaptation to the stresses imposed by this harsh environment. We used an iterative scaffolding strategy with data from short-reads, single-molecule long reads, proximity ligation data, and a genetic map to produce a 302 Mb assembly that is highly contiguous with 91.6% assembled into eight chromosomes (the base chromosome number). To identify candidate genes and gene families that may have facilitated adaptation to Arctic environmental stresses, we performed comparative genomic analyses with nine non-Arctic Brassicaceae species. We show that the D. nivalis genome contains expanded suites of genes associated with drought and cold stress (e.g. related to the maintenance of oxidation-reduction homeostasis, meiosis, and signaling pathways). The expansions of gene families associated with these functions appear to be driven in part by the activity of transposable elements. Tests of positive selection identify suites of candidate genes associated with meiosis and photoperiodism, as well as cold, drought, and oxidative stress responses. Our results reveal a multifaceted landscape of stress adaptation in the D. nivalis genome, offering avenues for the continued development of this species as an Arctic model plant.

Authors

  • Nowak, Michael ;
  • Birkeland, Siri ;
  • Mandáková, Terezie ;
  • Choudhury, Rimjhim Roy ;
  • Guo, Xinyi ;
  • Gustafsson, Lovisa ;
  • Gizaw, Abel ;
  • Schrøder-Nielsen, Audun ;
  • Fracassetti, Marco ;
  • Brysting, Anne ;
  • Rieseberg, Loren ;
  • Slotte, Tanja ;
  • Parisod, Christian ;
  • Lysak, Martin ;
  • Brochmann, Christian
1 Citation0 Mentions42% FAIR0.9 Dataset Index
10.14288/1.03980892020

Data-Ikeda-Mol_Ecol

No description available

Authors

  • Ikeda, Hajime ;
  • Eidesen, Pernille ;
  • Yakubov, Valentin ;
  • Barkalov, Vyacheslav ;
  • Brochmann, Christian ;
  • Setoguchi, Hiroaki
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.24fb2/12017

Walia_goat_diet_embl113.tag

No description available

Authors

  • Gebremedhin, Berihun ;
  • Flagstad, Øystein ;
  • Bekele, Afework ;
  • Chala, Desalegn ;
  • Bakkestuen, Vegar ;
  • Boessenkool, Sanne ;
  • Popp, Magnus ;
  • Gussarova, Galina ;
  • Schrøder-Nielsen, Audun ;
  • Nemomissa, Sileshi ;
  • Brochmann, Christian ;
  • Stenseth, Nils Christian ;
  • Epp, Laura Saskia
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.45kf5/32016

Walia_goat_diet_afroalp.tag

No description available

Authors

  • Gebremedhin, Berihun ;
  • Flagstad, Øystein ;
  • Bekele, Afework ;
  • Chala, Desalegn ;
  • Bakkestuen, Vegar ;
  • Boessenkool, Sanne ;
  • Popp, Magnus ;
  • Gussarova, Galina ;
  • Schrøder-Nielsen, Audun ;
  • Nemomissa, Sileshi ;
  • Brochmann, Christian ;
  • Stenseth, Nils Christian ;
  • Epp, Laura Saskia
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.45kf5/22016

Afro-alpine_taxonomic_ref_library_v2

No description available

Authors

  • Gebremedhin, Berihun ;
  • Flagstad, Øystein ;
  • Bekele, Afework ;
  • Chala, Desalegn ;
  • Bakkestuen, Vegar ;
  • Boessenkool, Sanne ;
  • Popp, Magnus ;
  • Gussarova, Galina ;
  • Schrøder-Nielsen, Audun ;
  • Nemomissa, Sileshi ;
  • Brochmann, Christian ;
  • Stenseth, Nils Christian ;
  • Epp, Laura Saskia
0 Citations0 Mentions77% FAIR0.8 Dataset Index
10.5061/dryad.45kf5/12016

trnS_trnG_Alignment_58seq

No description available

Authors

  • Eidesen, Pernille Bronken ;
  • Alsos, Inger Greve ;
  • Brochmann, Christian
0 Citations0 Mentions77% FAIR0.8 Dataset Index
10.5061/dryad.c3g80/132015

Betula_pubescens_and ref_pop_marker_frq__3primers

No description available

Authors

  • Eidesen, Pernille Bronken ;
  • Alsos, Inger Greve ;
  • Brochmann, Christian
0 Citations0 Mentions77% FAIR0.8 Dataset Index
10.5061/dryad.c3g80/122015

Betula_ssp_pop_marker_frq__1primer

No description available

Authors

  • Eidesen, Pernille Bronken ;
  • Alsos, Inger Greve ;
  • Brochmann, Christian
0 Citations0 Mentions77% FAIR0.8 Dataset Index
10.5061/dryad.c3g80/112015

B_pubescens_only_pairwise_geographical_distance

No description available

Authors

  • Eidesen, Pernille Bronken ;
  • Alsos, Inger Greve ;
  • Brochmann, Christian
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.c3g80/102015

B_nana_only_pairwise_geographical_distance

No description available

Authors

  • Eidesen, Pernille Bronken ;
  • Alsos, Inger Greve ;
  • Brochmann, Christian
0 Citations0 Mentions77% FAIR1.9 Dataset Index
10.5061/dryad.c3g80/92015