Automated Author ProfileSoares, Amadeu M V M
0000-0003-0879-9470
Soares, Amadeu M V M
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 17.3 (sum of 9 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
This dataset is part of the manuscript titled "The Life Cycle in Caenorhabditis elegans as a Tool to Unravel the Effects of Chemical Substances: A One Health Perspective." It contains the results from a series of bioassays conducted to evaluate the effects of diclofenac, MCPA, cypermethrin, and flupyradifurone on different lifestages of C. elegans. For further information, please feel free to contact the authors via email.
Authors
- Campos, Fábio ;
- Pavlaki, Maria ;
- Soares, Amadeu ;
- Loureiro, Susana
This dataset is part of the manuscript titled "The Life Cycle in Caenorhabditis elegans as a Tool to Unravel the Effects of Chemical Substances: A One Health Perspective." It contains the results from a series of bioassays conducted to evaluate the effects of diclofenac, MCPA, cypermethrin, and flupyradifurone on different lifestages of C. elegans. For further information, please feel free to contact the authors via email.
Authors
- Campos, Fábio ;
- Pavlaki, Maria ;
- Soares, Amadeu ;
- Loureiro, Susana
This study investigated the combined impacts of UV-filters 4-methylbenzylidene camphor (4-MBC) and benzophenone-3 (BP-3), at ecologically relevant concentrations (1 and 10 µg/L), under two target pH levels (8.2 and 7.7, reflecting a ∆pH of 0 and -0.3 relative to the average pH at the sampling site), on the biochemical performance and male reproductive health of the mussel Mytilus galloprovincialis.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-02-17.
Authors
- Cuccaro, Alessia ;
- Moreira, Anthony ;
- De Marchi, Lucia ;
- Meucci, Valentina ;
- Soares, Amadeu M V M ;
- Pretti, Carlo ;
- Freitas, Rosa
In coastal systems, organisms are exposed to a multitude of stressors whose interactions and effects are poorly studied. Pharmaceutical drugs and Climate Change consequences, such as reduced pH, are examples of stressors affecting marine organisms, as bivalves. Although a vast literature is available for the effects of these stressors when acting individually, very limited information exists on the impacts that the combination of both can have on marine bivalves. For this reason, this study aimed to evaluate the impacts of a simulated ocean acidification scenario (control pH, 8.0; reduced pH, pH 7.6) on the effects of the antiepileptic carbamazepine (CBZ, 1 μg/L) and the antihistamine cetirizine (CTZ, 0.6 μg/L), when acting individually and combined (CBZ + CTZ), on the edible clam Ruditapes philippinarum. After 28 days of exposure, drug concentrations, bioconcentration factors and biochemical parameters related to the clam's metabolic capacity and oxidative stress were evaluated. The results showed that R. philippinarum clams responded differently to pharmaceutical drugs depending on the pH tested, influencing both bioconcentration and biological responses. In general, drug combined treatments showed fewer impacts than drugs acting alone, and acidification seemed to activate at a higher extension the elimination processes that were not activated under control pH. Also, reduced pH per se exerted negative impacts (e.g., cellular damage) on R. philippinarum and the combination with pharmaceutical drugs did not enhance the toxicity.
Authors
- Almeida, Angela ;
- Calisto, Vania ;
- Esteves, Valdemar I ;
- Schneider, Rudolf J ;
- Soares, Amadeu M V M ;
- Freitas, Rosa
Ocean acidification events are recognized as important drivers of change in biological systems. Particularly, the impacts of acidification are more severe in estuarine systems than in surface ocean due to their shallowness, low buffering capacity, low salinity and high organic matter from land drainage. Moreover, because they are transitional areas, estuaries can be seriously impacted by a vast number of anthropogenic activities and in the last decades, carbon nanomaterials (CNMs) are considered as emerging contaminants in these ecosystems. Considering all these evidences, chronic experiment was carried out, trying to understand the possible alteration on the chemical behaviour of two different CNMs (functionalized and pristine) in predicted climate change scenarios and consequently, how these alterations could modify the sensitivity of one the most common marine and estuarine organisms (the polychaeta Hediste diversicolor) assessing a set of biomarkers related to polychaetes oxidative status as well as the metabolic performance and neurotoxicity. Our results demonstrated that all enzymes worked together to counteract seawater acidification and CNMs, however oxidative stress in the exposed polychaetes to both CNMs, especially under ocean acidification conditions, was enhanced. In fact, although the antioxidant enzymes tried to cope as compensatory response of cellular defense systems against oxidative stress, the synergistic interactive effects of pH and functionalized CNMs indicated that acidified pH significantly increased the oxidative damage (in terms of lipid peroxidation) in the cotaminated organisms. Different responses were observed in organisms submitted to pristine CNMs under pH control, where the lipid peroxidation did not increase along with the increasing exposure concentrations. The present results further demonstrated neurotoxicity caused by both CNMs, especially noticeable at acidified conditions. The mechanism of enhanced toxicity could be attributed to slighter aggregation and more suspended NMs in acidified seawater (as demonstrated by the DLS analysis). Therefore, ocean acidification may cause a higher risk of CNMs to marine ecosystems.
Authors
- De Marchi, Lucia ;
- Pretti, Carlo ;
- Chiellini, Federica ;
- Morelli, Andrea ;
- Neto, Victor ;
- Soares, Amadeu M V M ;
- Figueira, Etelvina ;
- Freitas, Rosa
Several works evaluated the toxicity of pharmaceutical drugs and climate related changes in invertebrates but few explored the combined effects of both stressors, namely considering their mode of action (MoA). Carbamazepine (CBZ) and cetirizine (CTZ) are pharmaceutical drugs detected in the environment and the toxicity derived from the combined effects of these drugs with ocean acidification (OA) is poorly explored. Thus, the present study investigated the biochemical parameters related to an oxidative stress response and the transcription of genes related to the MoA of CBZ (1.0 μg/L) and CTZ (0.6 μg/L) in the clam Ruditapes philippinarum chronically exposed (28 days) to control (7.8) and low (7.5) pH conditions. The results obtained showed that despite the clams accumulated both drugs, at low pH the clams exposed to CTZ decreased drug concentration and BCF values (CTZ uptake: 2.0 ± 0.5 ng/g fresh weight; BCF: 3.8 ± 0.9) in comparison with clams exposed to control pH (CTZ uptake: 2.9 ± 0.3 ng/g fresh weight; BCF: 5.5 ± 0.6). No oxidative stress was induced by the exposure to CBZ or CTZ at each pH level, but the transcription of several genes related with the MoA (neurotransmission, immunity and biomineralization) was altered by low pH, drug exposure and the combination of both stressors. At both pH conditions, CBZ increased the transcription of GABA receptor gene (neurotransmission) and CTZ led to a decrease of Perlucin gene (biomineralization) transcription. The transcription of MyD88 gene (immunity) decreased at low pH (7.5) combined with drug exposure (CBZ or CTZ). Thus, it was highlighted that the interaction of drug exposure and low pH conditions can change bivalves' sensitivity to drugs or alter drugs toxicity.
Authors
- Almeida, Angela ;
- Freitas, Rosa ;
- Calisto, Vania ;
- Esteves, Valdemar I ;
- Schneider, Rudolf J ;
- Soares, Amadeu M V M ;
- Figueira, Etelvina ;
- Campos, Bruno ;
- Barata, Carlos
Proteomic analysis was performed to compare the effects of Arsenic (As), seawater acidification (Low pH) and the combination of both stressors (Low pH + As) on Crassostrea angulata and Crassostrea gigas juveniles in the context of global environmental change. This study aimed to elucidate if two closely related Crassostrea species respond similarly to these environmental stressors, considering both single and combined exposures, to infer if the simultaneous exposure to both stressors induced a differentiated response. Identification of the most important differentially expressed proteins between conditions revealed marked differences in the response of each species towards single and combined exposures, evidencing species-related differences towards each experimental condition. Moreover, protein alterations observed in the combined exposure (Low pH + As) were substantially different from those observed in single exposures. Identified proteins and their putative biological functions revealed an array of modes of action in each condition. Among the most important, those involved in cellular structure (Actin, Atlastin, Severin, Gelsolin, Coronin) and extracellular matrix modulation (Ependymin, Tight junction ZO-1, Neprilysin) were strongly regulated, although in different exposure conditions and species. Data also revealed differences regarding metabolic modulation capacity (ATP beta, Enolase, Aconitate hydratase) and oxidative stress response (Aldehyde dehydrogenase, Lactoylglutathione, Retinal dehydrogenase) of the species, which also depended on single or combined exposures, illustrating a different response capacity of both oyster species to the presence of multiple stressors. Interestingly, alterations of piRNA abundance in C. angulata suggested genome reconfiguration in response to multiple stressors, likely an important mode of action related to adaptive evolution mechanisms previously unknown to oyster species, which requires further investigation. Our findings provide a deeper insight into the complexity of C. angulata and C. gigas responses to environmental stress at the proteome level, evidencing different capacities to endure abiotic changes, with relevance regarding the ecophysiological fitness of the species and competitive advantages in a changing environment.
Authors
- Moreira, Anthony ;
- Figueira, Etelvina ;
- Mestre, Nélia C ;
- Schrama, Denise ;
- Soares, Amadeu M V M ;
- Freitas, Rosa ;
- Bebianno, Maria João
Environmental hypercapnia in shallow coastal marine ecosystems can be exacerbated by increasing levels of atmospheric CO2. In these ecosystems organisms are expected to become increasingly subjected to pCO2 levels several times higher than those inhabiting ocean waters (e.g.: 10,000 µatm), but still our current understanding on different species capacity to respond to such levels of hypercapnia is limited. Oysters are among the most important foundation species inhabiting these coastal ecosystems, although natural oyster banks are increasingly threatened worldwide. In the present study we studied the effects of hypercapnia on two important oyster species, the pacific oyster C. gigas and the mangrove oyster C. brasiliana, to bring new insights on different species response mechanisms towards three hypercapnic levels (ca. 1,000; 4,000; 10,000 µatm), by study of a set of biomarkers related to metabolic potential (electron transport system – ETS), antioxidant capacity (SOD, CAT, GSH), cellular damage (LPO) and energetic fitness (GLY), in two life stages (juvenile and adult) after 28 days of exposure.Results showed marked differences between each species tolerance capacity to hypercapnia, with contrasting metabolic readjustment strategies (ETS), different antioxidant response capacities (SOD, CAT, GSH), which generally allowed to prevent increased cellular damage (LPO) and energetic impairment (GLY) in both species. Juveniles were more responsive to hypercapnia stress in both congeners, and are likely to be most sensitive to extreme hypercapnia in the environment. Juvenile C. gigas presented more pronounced biochemical alterations at intermediate hypercapnia (4,000 µatm) than C. brasiliana. Adult C. gigas showed biochemical alterations mostly in response to high hypercapnia (10,000 µatm), while adult C. brasiliana were less responsive to this environmental stressor, despite presenting decreased metabolic potential.Our data bring new insights on the biochemical performance of two important oyster species, and suggest that the duration of extreme hypercapnia events in the ecosystem may pose increased challenges for these organisms as their tolerance capacity may be time limited.
Authors
- Moreira, Anthony ;
- Figueira, Etelvina ;
- Pecora, Iracy L ;
- Soares, Amadeu M V M ;
- Freitas, Rosa
Changes in seawater pH, temperature and salinity are expected to occur in the near future, which can be a threat to aquatic systems, mainly for marine coastal areas, and their inhabiting species. Hence, the present study proposes to evaluate the effects of temperature shifts, pH decrease and salinity changes in the tissue's regenerative capacity of the polychaete Diopatra neapolitana. This study evidenced that D. neapolitana individuals exposed to lower pH exhibited a significantly lower capacity to regenerate their body, while with the increase of temperature individuals showed a higher capacity to regenerate their tissues. Furthermore, the present work demonstrated that individuals exposed to salinities 28 and 35 did not present significant differences between them, while salinities 21 and 42 negatively influenced the regenerative capacity of D. neapolitana. At the end of regeneration, comparing all conditions, high salinity (42) seemed to have a greater impact on the regenerative capacity of individuals than the other factors, since under this condition individuals took longer to completely regenerate. Overall, this study demonstrated that variations in abiotic factors can strongly affect D. neapolitana's performance.
Authors
- Pires, Adília ;
- Figueira, Etelvina ;
- Moreira, Anthony ;
- Soares, Amadeu M V M ;
- Freitas, Rosa