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Automated Author Profile

Baum, Thomas J.

Current S-Index

8.3

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.4

Average Dataset Index per dataset

Total Datasets

19

Total datasets for this author

Average FAIR Score

30.2%

Average FAIR Score per dataset

Total Citations

2

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Supplemental Material for Kranse et al., 2020

Supplemental results and methods associated with manuscript.

Authors

  • Kranse, Olaf ;
  • Beasley, Helen ;
  • Adams, Sally ;
  • Silva, Andre Pires Da ;
  • Bell, Christopher ;
  • Lilley, Catherine J. ;
  • Urwin, Peter E. ;
  • Bird, David ;
  • Miska, Eric ;
  • Smant, Geert ;
  • Gheysen, Godelieve ;
  • Jones, John ;
  • Viney, Mark ;
  • Abad, Pierre ;
  • Maier, Thomas R. ;
  • Baum, Thomas J. ;
  • Siddique, Shahid ;
  • Williamson, Valerie ;
  • Akay, Alper ;
  • Akker, Sebastian Eves-Van Den
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.25387/g3.13186817.v1January 2020

Additional file 6 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

BLAST hit analyses of transcripts with gland cell localization against the draft genome of Pratylenchus penetrans. (XLSX 11 kb)

Authors

  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.13141955.v1January 2020

Additional file 8 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

List of CEGMA genes used in this study. (XLSX 693 kb)

Authors

  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.13141961January 2020

Additional file 6 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

BLAST hit analyses of transcripts with gland cell localization against the draft genome of Pratylenchus penetrans. (XLSX 11 kb)

Authors

  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.13141955January 2020

Additional file 7 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

List of primers used in this study. (XLSX 14 kb)

Authors

  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.13141958.v1January 2020

Supplemental Material for Kranse et al., 2020

Supplemental results and methods associated with manuscript.

Authors

  • Kranse, Olaf ;
  • Beasley, Helen ;
  • Adams, Sally ;
  • Silva, Andre Pires Da ;
  • Bell, Christopher ;
  • Lilley, Catherine J. ;
  • Urwin, Peter E. ;
  • Bird, David ;
  • Miska, Eric ;
  • Smant, Geert ;
  • Gheysen, Godelieve ;
  • Jones, John ;
  • Viney, Mark ;
  • Abad, Pierre ;
  • Maier, Thomas R. ;
  • Baum, Thomas J. ;
  • Siddique, Shahid ;
  • Williamson, Valerie ;
  • Akay, Alper ;
  • Akker, Sebastian Eves-Van Den
2 Citations0 Mentions13% FAIR0.9 Dataset Index
10.25387/g3.13186817January 2020

Additional file 1 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

Summary of BLAST hit analyses of the top 230 most abundant transcripts of Pratylenchus penetrans encoding putative secreted proteins (FPKM > 8) originated from the esophageal gland cells library. BLAST analyses were performed against the non-redundant GenBank database. Transcript abundance was determined as Fragments Per Kilobase of Transcript per Million mapped reads (FPKM) values. (XLSX 30 kb)

Authors

  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.13141937.v1January 2020

Additional file 1 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

Summary of BLAST hit analyses of the top 230 most abundant transcripts of Pratylenchus penetrans encoding putative secreted proteins (FPKM > 8) originated from the esophageal gland cells library. BLAST analyses were performed against the non-redundant GenBank database. Transcript abundance was determined as Fragments Per Kilobase of Transcript per Million mapped reads (FPKM) values. (XLSX 30 kb)

Authors

  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.13141937January 2020

Additional file 2 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

List of transcripts encoding putative effector proteins with FPKM values below the established cut-off (FPKM

Authors

  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.13141940.v1January 2020

Additional file 2 of A new esophageal gland transcriptome reveals signatures of large scale de novo effector birth in the root lesion nematode Pratylenchus penetrans

List of transcripts encoding putative effector proteins with FPKM values below the established cut-off (FPKM

Authors

  • Vieira, Paulo ;
  • Shao, Jonathan ;
  • Paramasivan Vijayapalani ;
  • Maier, Thomas R. ;
  • Pellegrin, Clement ;
  • Akker, Sebastian Eves-Van Den ;
  • Baum, Thomas J. ;
  • Nemchinov, Lev G.
0 Citations0 Mentions13% FAIR0.3 Dataset Index
10.6084/m9.figshare.13141940January 2020