Automated Author ProfileCaffier, Valérie
Caffier, Valérie
Current S-Index
Sum of Dataset Indices for all datasets
Average Dataset Index per Dataset
Average Dataset Index per dataset
Total Datasets
Total datasets for this author
Average FAIR Score
Average FAIR Score per dataset
Total Citations
Total citations to the author's datasets
Total Mentions
Total mentions of the author's datasets
S-Index Interpretation
The S-Index (Sharing Index) is a comprehensive metric that represents the cumulative impact of all your datasets. It is calculated as the sum of Dataset Index scores across all your claimed datasets.
What it means:
- A higher S-index indicates greater overall impact of your datasets relative to typical datasets in their fields of research
- The S-Index grows as you add more datasets or as existing datasets gain more citations and mentions
- It provides a single number to track your research data impact over time
Current S-Index: 7.7 (sum of 5 datasets Dataset Index scores)
More information here.
S-Index Over Time
Cumulative Citations Over Time
Cumulative Mentions Over Time
Datasets
The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V. inaequalis and V. asperata on apple, V. aucupariae on sorbus and V. pirina on pear. Genomic features underlying these subdivisions remain poorly understood. Here, we report whole genome sequencing of 87 Venturia strains that represent each species and each population within V. inaequalis. We present a PacBio genome assembly for the V. inaequalis EU-B04 reference isolate. The size of selected genomes was determined by flow cytometry, and varied from 45 to 93 Mb. Genome assemblies of V. inaequalis and V. aucupariae contain a high content of transposable elements, most of which belong to the Gypsy or Copia LTR superfamilies and have been inactivated by Repeat-Induced Point mutations. The reference assembly of V. inaequalis presents a mosaic structure of GC-equilibrated regions that mainly contain predicted genes and AT-rich regions, mainly composed of TEs. The availability of these genome sequences is expected to stimulate genetics and population genomics research of Venturia pathogens. Especially, it will help understanding the evolutionary history of Venturia species that are pathogenic on different hosts, a history that has probably been substantially influenced by TEs.
Authors
- Cam, Bruno Le ;
- Sargent, Dan ;
- Gouzy, Jérôme ;
- Amselem, Joëlle ;
- Marie-Noëlle Bellanger ;
- Bouchez, Olivier ;
- Brown, Spencer ;
- Caffier, Valérie ;
- Gracia, Marie De ;
- Debuchy, Robert ;
- Duvaux, Ludovic ;
- Payen, Thibaut ;
- Sannier, Mélanie ;
- Shiller, Jason ;
- Collemare, Jérôme ;
- Lemaire, Christophe
The Venturia genus comprises fungal species that are pathogens on Rosaceae host plants, including V. inaequalis and V. asperata on apple, V. aucupariae on sorbus and V. pirina on pear. Genomic features underlying these subdivisions remain poorly understood. Here, we report whole genome sequencing of 87 Venturia strains that represent each species and each population within V. inaequalis. We present a PacBio genome assembly for the V. inaequalis EU-B04 reference isolate. The size of selected genomes was determined by flow cytometry, and varied from 45 to 93 Mb. Genome assemblies of V. inaequalis and V. aucupariae contain a high content of transposable elements, most of which belong to the Gypsy or Copia LTR superfamilies and have been inactivated by Repeat-Induced Point mutations. The reference assembly of V. inaequalis presents a mosaic structure of GC-equilibrated regions that mainly contain predicted genes and AT-rich regions, mainly composed of TEs. The availability of these genome sequences is expected to stimulate genetics and population genomics research of Venturia pathogens. Especially, it will help understanding the evolutionary history of Venturia species that are pathogenic on different hosts, a history that has probably been substantially influenced by TEs.
Authors
- Cam, Bruno Le ;
- Sargent, Dan ;
- Gouzy, Jérôme ;
- Amselem, Joëlle ;
- Marie-Noëlle Bellanger ;
- Bouchez, Olivier ;
- Brown, Spencer ;
- Caffier, Valérie ;
- Gracia, Marie De ;
- Debuchy, Robert ;
- Duvaux, Ludovic ;
- Payen, Thibaut ;
- Sannier, Mélanie ;
- Shiller, Jason ;
- Collemare, Jérôme ;
- Lemaire, Christophe
No description available
Authors
- Leroy, Thibault ;
- Caffier, Valérie ;
- Celton, Jean-Marc ;
- Anger, Nicolas ;
- Durel, Charles-Eric ;
- Lemaire, Christophe ;
- Le Cam, Bruno
No description available
Authors
- Lê Van, Amandine ;
- Durel, Charles- Eric ;
- Caffier, Valérie ;
- Le Cam, Bruno