Automated Author Profile

Rydzak, Thomas

Current S-Index

21.3

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.8

Average Dataset Index per dataset

Total Datasets

28

Total datasets for this author

Average FAIR Score

84.6%

Average FAIR Score per dataset

Total Citations

21

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

MOESM6 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 6: Table S3. Fold changes of intercellular metabolite there were significantly higher or lower in concentration at growth-limiting pHs.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR0.9 Dataset Index
10.6084/m9.figshare.6105431.v12018

MOESM2 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 2. Raw and processed read counts, alignment statistics, log2-fold changes in the gene expression, and K-means clusters and GO enrichment of differentially expressed genes from samples taken from C. thermocellum LL1210 cultured in chemostats at pH values 6.98, 6.48, pH 6.24, and pH 6.12 (washout conditions). Gene expression at pH 6.98 was used as a reference for differential expression at lower pH values.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR1.0 Dataset Index
10.6084/m9.figshare.6105371.v12018

MOESM1 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 1. Data logs, substrate and product concentrations, internal and external pH readings, and media formulation for chemostat reactor cultures of C. thermocellum LL1210.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR1.0 Dataset Index
10.6084/m9.figshare.6105350.v12018

MOESM7 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 7. Extracellular amino acid concentrations in media from C. thermocellum LL1210 chemostats that were sampled when pH values were pH 6.48, pH 6.24, pH 6.12, and below. Demonstrations of data homoscedasticity for T tests.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR1.0 Dataset Index
10.6084/m9.figshare.6105437.v12018

MOESM7 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 7. Extracellular amino acid concentrations in media from C. thermocellum LL1210 chemostats that were sampled when pH values were pH 6.48, pH 6.24, pH 6.12, and below. Demonstrations of data homoscedasticity for T tests.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.61054372018

MOESM6 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 6: Table S3. Fold changes of intercellular metabolite there were significantly higher or lower in concentration at growth-limiting pHs.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.61054312018

MOESM2 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 2. Raw and processed read counts, alignment statistics, log2-fold changes in the gene expression, and K-means clusters and GO enrichment of differentially expressed genes from samples taken from C. thermocellum LL1210 cultured in chemostats at pH values 6.98, 6.48, pH 6.24, and pH 6.12 (washout conditions). Gene expression at pH 6.98 was used as a reference for differential expression at lower pH values.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.61053712018

MOESM1 of Clostridium thermocellum LL1210 pH homeostasis mechanisms informed by transcriptomics and metabolomics

Additional file 1. Data logs, substrate and product concentrations, internal and external pH readings, and media formulation for chemostat reactor cultures of C. thermocellum LL1210.

Authors

  • Whitham, Jason ;
  • Moon, Ji-Won ;
  • Rodriguez, Miguel ;
  • Engle, Nancy ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Malaney Abel ;
  • Tschaplinski, Timothy ;
  • Guss, Adam ;
  • Brown, Steven
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.61053502018

MOESM4 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Additional file 4: Data set S2. Proteomic analysis of wild type and Î hydG in the presence or absence of acetate. Proteomic analysis of wild type and Î hydG in the presence or absence of acetate. Color code of the p values based on significance, with red indicating highly significant and white non-significant.

Authors

  • Ranjita Biswas ;
  • Wilson, Charlotte ;
  • Giannone, Richard ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Manesh Shah ;
  • Hettich, Robert ;
  • Brown, Steven ;
  • Guss, Adam
0 Citations0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.c.3657074_d3.v12017

MOESM6 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism

Additional file 6: Data set S4. Acetylation analysis of Î hydG and â hydGâ ech strains. Acetylation of the proteins in mutants were compared to wild type in the presence or absence of acetate.

Authors

  • Ranjita Biswas ;
  • Wilson, Charlotte ;
  • Giannone, Richard ;
  • Klingeman, Dawn ;
  • Rydzak, Thomas ;
  • Manesh Shah ;
  • Hettich, Robert ;
  • Brown, Steven ;
  • Guss, Adam
1 Citation0 Mentions85% FAIR0.9 Dataset Index
10.6084/m9.figshare.c.3657074_d2.v12017