Automated Author Profile

Chen, Virginia

Current S-Index

6.0

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.5

Average Dataset Index per dataset

Total Datasets

12

Total datasets for this author

Average FAIR Score

13.5%

Average FAIR Score per dataset

Total Citations

11

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Additional file 2: of Enumerateblood – an R package to estimate the cellular composition of whole blood from Affymetrix Gene ST gene expression profiles

Association of the 600 CpG sites used by minfi's ‘estimateCellCounts’ function with disease status (Table S1), sex (Table S2), or age (Table S3), after adjusting for cellular composition using CBC/Diffs in the RTP cohort. (XLSX 172 kb)

Authors

  • Shannon, Casey ;
  • Balshaw, Robert ;
  • Chen, Virginia ;
  • Hollander, Zsuzsanna ;
  • Toma, Mustafa ;
  • McManus, Bruce ;
  • J. FitzGerald ;
  • Sin, Don ;
  • Ng, Raymond ;
  • Tebbutt, Scott
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.c.3660524_d3.v1January 2017

Additional file 2: of Enumerateblood – an R package to estimate the cellular composition of whole blood from Affymetrix Gene ST gene expression profiles

Association of the 600 CpG sites used by minfi's ‘estimateCellCounts’ function with disease status (Table S1), sex (Table S2), or age (Table S3), after adjusting for cellular composition using CBC/Diffs in the RTP cohort. (XLSX 172 kb)

Authors

  • Shannon, Casey ;
  • Balshaw, Robert ;
  • Chen, Virginia ;
  • Hollander, Zsuzsanna ;
  • Toma, Mustafa ;
  • McManus, Bruce ;
  • J. FitzGerald ;
  • Sin, Don ;
  • Ng, Raymond ;
  • Tebbutt, Scott
0 Citations0 Mentions13% FAIR0.1 Dataset Index
10.6084/m9.figshare.c.3660524_d3January 2017

Additional file 7: Table S5. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

Pathway over-representation analysis results for the WGCNA and Chaussabel modules sets. For each module identification strategy and module in turn, we carried out pathway over-representation analysis against the Broad Instituteâ s MSigDB collections by comparing the gene set and module membership using a simple hypergeometric test. We report both p-value and false discovery rate adjusting for multiple comparisons using the Benjamini-Hochberg procedure. (CSV 196Â kb)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.c.3623801_d5January 2016

Additional file 5: Table S4. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

Chaussabel reference module sets. (CSV 497 bytes)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.c.3623801_d6January 2016

Additional file 2: Table S1. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

Patient demographics. Demographic characteristics of the 238 COPD patients. (CSV 495 bytes)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.c.3623801_d8January 2016

Additional file 2: Table S1. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

Patient demographics. Demographic characteristics of the 238 COPD patients. (CSV 495 bytes)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.7 Dataset Index
10.6084/m9.figshare.c.3623801_d8.v1January 2016

Additional file 5: Table S4. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

Chaussabel reference module sets. (CSV 497 bytes)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.c.3623801_d6.v1January 2016

Additional file 7: Table S5. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

Pathway over-representation analysis results for the WGCNA and Chaussabel modules sets. For each module identification strategy and module in turn, we carried out pathway over-representation analysis against the Broad Instituteâ s MSigDB collections by comparing the gene set and module membership using a simple hypergeometric test. We report both p-value and false discovery rate adjusting for multiple comparisons using the Benjamini-Hochberg procedure. (CSV 196Â kb)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.c.3623801_d5.v1January 2016

Additional file 3: Table S2. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

WGCNA reference module sets. (CSV 550 bytes)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.c.3623801_d3.v1January 2016

Additional file 4: Table S3. of SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations

Pihur reference module sets. (CSV 701 bytes)

Authors

  • Shannon, Casey ;
  • Chen, Virginia ;
  • Takhar, Mandeep ;
  • Hollander, Zsuzsanna ;
  • Balshaw, Robert ;
  • McManus, Bruce ;
  • Tebbutt, Scott ;
  • Sin, Don ;
  • Ng, Raymond
1 Citation0 Mentions13% FAIR0.5 Dataset Index
10.6084/m9.figshare.c.3623801_d2January 2016