Table of nucleotide polymorphism allele locations and genotypes used to type genotype 1 M. haemolytica isolates (first table). Due to the size of the dataset, this is the first of two tables that contain the genotypes (Additional files 4 and 5). The table contains the locations and allele scores for 11,712 of the 16,888 nucleotide polymorphisms used to type genotype 1 M. haemolytica and construct the network of Fig. 2. Each polymorphism was unambiguously scored in 90% or more of the isolates. (CSV 12221 kb)

Table of nucleotide polymorphism allele locations and genotypes used to score genotype 2 M. haemolytica isolates (second table). Due to the size of the dataset, this is the second of two tables that contain the genotypes (Additional files 8 and 9). The table contains the locations and allele scores for 8229 of 24,475 nucleotide polymorphisms used to type genotype 2 M. haemolytica and construct the network of Fig. 3. Each polymorphism was unambiguously scored in 90% or more of the isolates. (CSV 9995 kb)

Table of nucleotide polymorphisms with both alleles observed in genotype 2 M. haemolytica isolates. The table shows informative and tagging polymorphisms for the subtypes of genotype 2. (XLSX 131 kb)

Table of nucleotide polymorphism allele locations and genotypes used to initially type all 1133 M. haemolytica isolates (second table). Due to the size of the dataset this is the second of two tables that contain the genotypes (Additional files 2 and 3). The table contains the locations and allele scores for 5141 of 16,447 nucleotide polymorphisms that were used to generate the tree of Fig. 1. Each polymorphism was unambiguously scored in 95% or more of the isolates. (CSV 11580 kb)

Table of nucleotide polymorphisms with both alleles observed in genotype 1 M. haemolytica isolates. The table shows informative and tagging polymorphisms for the subtypes of genotype 1. (XLSX 87 kb)

Table of nucleotide polymorphism allele locations and genotypes used to type genotype 1 M. haemolytica isolates (second table). Due to the size of the dataset, this is the second of two tables that contain the genotypes (Additional files 4 and 5). The table contains the locations and allele scores for 5176 of the 16,888 nucleotide polymorphisms used to type genotype 1 M. haemolytica and construct the network of Fig. 2. Each polymorphism was unambiguously scored in 90% or more of the isolates. (CSV 5410 kb)

Table of nucleotide polymorphism allele locations and genotypes used to score genotype 2 M. haemolytica isolates (first table). Due to the size of the dataset, this is the first of two tables that contain the genotypes (Additional files 7 and 8). The table contains the locations and allele scores for 16,246 of 24,475 nucleotide polymorphisms used to type genotype 2 M. haemolytica and construct the network of Fig. 3. Each polymorphism was unambiguously scored in 90% or more of the isolates. (ZIP 3413 kb)

Table of nucleotide polymorphism allele locations and genotypes used to initially type all 1133 M. haemolytica isolates (first table). Due to the size of the dataset this is the first of two tables that contain the genotypes (Additional files 2 and 3). The table contains the locations and allele scores for 11,306 of 16,447 nucleotide polymorphisms that were used to generate the tree of Fig. 1. Each polymorphism was unambiguously scored in 95% or more of the isolates. (ZIP 4344 kb)

Table of M. haemolytica isolates used in this study. For each isolate, the table contains information regarding a Minilims identifier number for the isolate and for the isolate library, state or province of origin, year of isolation, the collection the isolate belongs to, an AHDRCC identifier number, the group the isolate belongs to, use in the study, genotype and subtype designation, ICE and antibiotic resistance gene sequence information. (XLSX 148 kb)

Additional file 6. Acquired antibiotic resistance genes in M. bovoculi IBK eye isolate Mb58069. Table containing the following information related to acquired antibiotic resistance genes in Mb58069: name of gene, % identity, matching accession number, position in Mb58069 genome and expected resistance phenotype.