Automated Author Profile

Baccarella, Alyssa

Current S-Index

9.0

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

0.5

Average Dataset Index per dataset

Total Datasets

20

Total datasets for this author

Average FAIR Score

60.4%

Average FAIR Score per dataset

Total Citations

15

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Additional file 6: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Interactive figure for comparison of performance metrics. (A) Absolute precision and recall for each workflow. (B) Relative ranks of precision and recall for each workflow. Grey dots show performance for all workflows for the selected read depth(s) and sample number(s); red dots highlight the selected workflow(s). (XLSX 536 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions85% FAIR0.7 Dataset Index
10.6084/m9.figshare.7345631.v12018

Additional file 1: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Original read depth of individual samples. (XLSX 12 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions15% FAIR0.5 Dataset Index
10.6084/m9.figshare.73455622018

Additional file 1: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Original read depth of individual samples. (XLSX 12 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions15% FAIR0.7 Dataset Index
10.6084/m9.figshare.7345562.v12018

Additional file 2: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Sample combinations for each iteration at varying sample numbers. The same sample combinations were run at all read depths and for all workflows. (XLSX 21 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.73455772018

Additional file 2: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Sample combinations for each iteration at varying sample numbers. The same sample combinations were run at all read depths and for all workflows. (XLSX 21 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions15% FAIR0.5 Dataset Index
10.6084/m9.figshare.7345577.v12018

Additional file 3: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Table of software tools, with versions and runtime parameters. (XLSX 15 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions15% FAIR0.5 Dataset Index
10.6084/m9.figshare.73455892018

Additional file 3: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Table of software tools, with versions and runtime parameters. (XLSX 15 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions15% FAIR0.7 Dataset Index
10.6084/m9.figshare.7345589.v12018

Additional file 4: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Literature survey citations and average sample number. 200 studies containing RNA-Seq differential expression analysis, either from all species or limited to primary human samples. Average sample number from these studies is also displayed in Fig. 4. (XLSX 52 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions15% FAIR0.5 Dataset Index
10.6084/m9.figshare.73456012018

Additional file 4: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Literature survey citations and average sample number. 200 studies containing RNA-Seq differential expression analysis, either from all species or limited to primary human samples. Average sample number from these studies is also displayed in Fig. 4. (XLSX 52 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions15% FAIR0.5 Dataset Index
10.6084/m9.figshare.7345601.v12018

Additional file 6: of Empirical assessment of the impact of sample number and read depth on RNA-Seq analysis workflow performance

Interactive figure for comparison of performance metrics. (A) Absolute precision and recall for each workflow. (B) Relative ranks of precision and recall for each workflow. Grey dots show performance for all workflows for the selected read depth(s) and sample number(s); red dots highlight the selected workflow(s). (XLSX 536 kb)

Authors

  • Baccarella, Alyssa ;
  • Williams, Claire ;
  • Parrish, Jay ;
  • Kim, Charles
1 Citation0 Mentions85% FAIR0.5 Dataset Index
10.6084/m9.figshare.73456312018