Automated Author Profile

Johnston, Paul R.

Freie Universität Berlin

Current S-Index

3.2

Sum of Dataset Indices for all datasets

Average Dataset Index per Dataset

1.6

Average Dataset Index per dataset

Total Datasets

2

Total datasets for this author

Average FAIR Score

76.9%

Average FAIR Score per dataset

Total Citations

3

Total citations to the author's datasets

Total Mentions

0

Total mentions of the author's datasets

S-Index Interpretation

S-Index Over Time

Cumulative Citations Over Time

Cumulative Mentions Over Time

Datasets

Data from: Gene expression response to a nematode parasite in novel and native eel hosts (Version: 5)

Invasive parasites are involved in population declines of new host species worldwide. The high susceptibilities observed in many novel hosts have been attributed to the lack of protective immunity to the parasites which native hosts acquired during their shared evolution. We experimentally infected Japanese eels (Anguilla japonica) and European eels (A. anguilla) with Anguillicola crassus, a nematode parasite that is native to the Japanese eel and invasive in the European eel. We inferred gene expression changes in head kidney tissue from both species, using RNA-seq data to determine the responses at two time points during the early stages of infection (3 and 23 days post-infection). At both time points, the novel host modified the expression of a larger and functionally more diverse set of genes than the native host. Strikingly, the native host regulated immune gene expression only at the earlier time point and to a small extent while the novel host regulated these genes at both time points. A low number of differentially expressed immune genes, especially in the native host, suggests that a systemic immune response was of minor importance during the early stages of infection. Transcript abundance of genes involved in cell respiration was reduced in the novel host which may affect its ability to cope with harsh conditions and energetically demanding activities. The observed gene expression changes in response to a novel parasite that we observed in a fish follow a general pattern observed in amphibians and mammals, and suggest that the disruption of physiological processes, rather than the absence of an immediate immune response, are responsible for the higher susceptibility of the novel host.

Authors

  • Bracamonte, Seraina E. ;
  • Johnston, Paul R. ;
  • Monaghan, Michael T. ;
  • Knopf, Klaus
2 Citations0 Mentions77% FAIR2.3 Dataset Index
10.5061/dryad.s1rn8pk3hOctober 2019

Data from: Transcriptome profiling of ontogeny in the acridid grasshopper Chorthippus biguttulus (Version: 1)

Acridid grasshoppers (Orthoptera:Acrididae) are widely used model organisms for developmental, evolutionary, and neurobiological research. Although there has been recent influx of orthopteran transcriptomic resources, many use pooled ontogenetic stages obscuring information about changes in gene expression during development. Here we developed a de novo transcriptome spanning 7 stages in the life cycle of the acridid grasshopper Chorthippus biguttulus. Samples from different stages encompassing embryonic development through adults were used for transcriptomic profiling, revealing patterns of differential gene expression that highlight processes in the different life stages. These patterns were validated with semi-quantitative RT-PCR. Embryonic development showed a strongly differentiated expression pattern compared to all of the other stages and genes upregulated in this stage were involved in signaling, cellular differentiation, and organ development. Our study is one of the first to examine gene expression during post-embryonic development in a hemimetabolous insect and we found that only the fourth and fifth instars had clusters of genes upregulated during these stages. These genes are involved in various processes ranging from synthesis of biogenic amines to chitin binding. These observations indicate that post-embryonic ontogeny is not a continuous process and that some instars are differentiated. Finally, genes upregulated in the imago were generally involved in aging and immunity. Our study highlights the importance of looking at ontogeny as a whole and indicates promising directions for future research in orthopteran development.

Authors

  • Berdan, Emma L. ;
  • Finck, Jonas ;
  • Johnston, Paul R. ;
  • Waurick, Isabelle ;
  • Mazzoni, Camila J. ;
  • Mayer, Frieder
1 Citation0 Mentions77% FAIR1.2 Dataset Index
10.5061/dryad.c5p1fMay 2017