Version 1.0.0

Mappability .bigwig reference files for hg38/hg19; various read lengths

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Peneder, Peter

Description

This dataset contains reference mappability .bigwig files for the reference genomes hg38 and hg19, for various read lengths. The files were generated with the GEM library (https://sourceforge.net/projects/gemlibrary/files/gem-library/Binary%20pre-release%203/GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2) using this script (based on this work). The files can be used as input for LIQUORICE (https://liquorice.readthedocs.io) - just select the file that matches your sequencing protocol (i.e. read length) and the reference genome of your mapped .bam files.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.8

FAIR Score

73%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

36%

Source

Scholar Data Model

Keywords

mappabilitybioinformaticsLIQUORICE

Normalization Factors

FT

30.77

CTw

1.00

MTw

1.00