Annotation results of two human retina organoids

Cell annotation was based on i) marker genes which were extracted from literature and expert knowledge, or (ii) via a transfer learning tool CaSTLe (Lieberman Y, Rokach L, Shay T, 2018) using the Cowan et al. (2020) organoid reference data set. Data preprocessing of both scRNA-seq data sets was done in scanpy (Wolf, F., Angerer, P. & Theis, 2018), and are included as h5ad-files. The annotation results are included in the .csv files