Automated metabolic assignment: Semi-supervised learning in metabolic analysis employing two dimensional Nuclear Magnetic Resonance (NMR)

View Dataset
Migdadi, Lubaba;Lambert, Jörg;Telfah, Ahmad;Hergenröder, Roland;Wöhler, Christian

Description

This dataset is related to the paper “Automated metabolic assignment: Semi-supervised learning in metabolic analysis employing two dimensional Nuclear Magnetic Resonance (NMR)”. https://www.sciencedirect.com/science/article/pii/S2001037021003792?via%3Dihub The dataset comprises horizontal and vertical frequencies of 2D NMR TOCSY of breast cancer-tissue sample. 2D TOCSY was acquired by employing a broadband high resolution 600.13 MHz (B0 = 14.1 T) NMR Bruker spectrometer (AVANCE III 600 with the Bruker magnet ASCEND 600) supported with the room temperature probe (BBO model-Bruker) and Magic Angle Spinning (MAS) probehead. 1D and 2D NMR spectra acquisition and processing were achieved by using the TopSpin software package 3.6. There are two files: BreastCancerMetabolites.csv: First column: numerical labels of the metabolites. Each number represent a metabolite. In total, there are 27 metabolites with multiple multiplets per metabolite. Second and third column: Horizontal and vertical frequencies for each metabolite. Labels.csv: The corresponding metabolites names.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.5

FAIR Score

79%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

Open Access

Assigned Domain

Subfield

Molecular Biology

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

94%

Source

Open Alex

Keywords

Machine learning, Semi-supervised learning, Metabolic profiling, 2D TOCSYNMR spectra, Pattern recognition

Normalization Factors

FT

53.85

CTw

1.00

MTw

1.00