Cancer-Associated Fibroblast Classification in Single-Cell and Spatial Proteomics Data

ometiff: Imaging Data Cell Masks: Masks generated with cellprofiler from ilastik segmentation training cp-output_config: All relevant cellprofiler output and additional configuration files (for example clinical data) necessary to generate the single cell experiments. IMC Data Objects: Single cell experiment RDS files. scRNA-seq_dataobjects: .Rds files containing the clustered breast cancer, colon cancer, HNSCC, NSCLC and PDAC datasets as well as the integrated validation dataset.