Version 1.0.0

Complete Genome Sequence of an Aeromonas rivuli Strain Isolated from Ready-to-Eat Food - Data Files

View Dataset
Schwartz, Keike;Borowiak, Maria;Strauch, Eckhard;Deneke, Carlus;Richter, Martin

Description

This dataset contains input and intermediate files of the bcgTree analysis described in the Schwartz et al. MRA manuscript entitled “Complete Genome Sequence of an Aeromonas rivuli Strain Isolated from Ready-to-Eat Food”. File name DescriptionAeromonadaceae identifier’.fa Amino acid FASTA file of the translated CDS sequences of a strain X (bcgTree input file) full_alignment.concat.fa Alignment of the concatenated amino acid sequences of 107 single-copy core genes that is used for phylogenetic tree calculation in bcgTree (bcgTree intermediate file) In the bcgTree files, the Aeromonadaceae sequences were named/abbreviated as follows: Sequence name in the bcgTree file Description AAZUK01-1 Tolumonas lignilytica BRL6-1 Aeromonas-caviae Aeromonas caviae NCTC 12244 Aeromonas-dhakensis Aeromonas dhakensis CIP 107500 Aeromonas-hydrophila Aeromonas hydrophila ATCC 7966 Aeromonas-rivuli Aeromonas rivuli DSM 22539 Aeromonas-rivuli-20-VB00005 Aeromonas rivuli 20-VB00005 Aeromonas-veronii Aeromonas veronii CECT 4257 CP001616-1 Tolumonas auensis DSM 9187 JACHGR01-1 Tolumonas osonensis DSM 22975

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.6

FAIR Score

73%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

Zenodo

License

Creative Commons Attribution 4.0 International

Open Access

Assigned Domain

Subfield

Immunology

Field

Immunology and Microbiology

Domain

Life Sciences

Confidence Score

98%

Source

Open Alex

Keywords

Aeromonas, Germany, food isolate, bcgTree phylogeny

Normalization Factors

FT

40.38

CTw

1.00

MTw

1.00