Jiaozhou Bay 16S rRNA & metagenome dataset

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Tao, Jianchang

Description

Data for contigs, MAGs, and other files generated using the JZB microbial dataset. Dataset includes:
Single assembly contigs (10 files): JZB_A53_27_201509_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 2.7 μm pore-sized filter at A53 station in September 2015 in Jiazhou Bay. JZB_A53_07_201509_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 0.7 μm pore-sized filter at A53 station in September 2015 in Jiazhou Bay. JZB_A53_02_201509_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 0.22 μm pore-sized filter at A53 station in September 2015 in Jiazhou Bay. JZB_A53_27_201603_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 2.7 μm pore-sized filter at A53 station in March 2016 in Jiazhou Bay. JZB_A53_02_201603_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 0.22 μm pore-sized filter at A53 station in March 2016 in Jiazhou Bay. JZB_D710_27_201509_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 2.7 μm pore-sized filter at D710 station in September 2015 in the open Yellow Sea. JZB_D710_07_201509_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 0.7 μm pore-sized filter at D710 station in September 2015 in the open Yellow Sea. JZB_D710_02_201509_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 0.22 μm pore-sized filter at D710 station in September 2015 in the open Yellow Sea. JZB_D710_07_201603_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 0.7 μm pore-sized filter at D710 station in March 2016 in the open Yellow Sea. JZB_D710_02_201603_single_assembly.final.contigs.tar.gz: Contigs from the individual assembly of sample collected onto 0.22 μm pore-sized filter at D710 station in March 2016 in the open Yellow Sea.
Co-assembly contigs (3 files): JZB_27_fractional_assembly.final.contigs.tar.gz: Contigs from co-assembly of samples collected onto 2.7 μm pore-sized filter. JZB_07_fractional_assembly.final.contigs.tar.gz: Contigs from co-assembly of samples collected onto 0.7 μm pore-sized filter. JZB_02_fractional_assembly.final.contigs.tar.gz: Contigs from co-assembly of samples collected onto 0.22 μm pore-sized filter.
JZB_MAGs.tar.gz: 915 non-redundant and purified prokaryotic genomes with ≥ 50% completeness and ≤ 5% contamination
Supplementary Table 1: Sampling information and environment factors.
Supplementary Table 2: The ASVs-table, ASVs taxonomy, and sequencing data information of 16S rDNA sequencing.
Supplementary Table 3: The contigs information; MAG information; reference genomes information of archaeal tree; reference genomes information of bacterial tree; Metagenome raw data information.

Citations (0)

Mentions (0)

Metrics

Dataset Index

1.8

FAIR Score

81%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

DOI

Publisher

figshare

Assigned Domain

Subfield

Ecology

Field

Environmental Science

Domain

Physical Sciences

Confidence Score

94%

Source

Open Alex

Keywords

60102 BioinformaticsFOS: Computer and information sciences

Normalization Factors

FT

15.38

CTw

1.00

MTw

1.00