Published on 01 January 2022

Transcriptome assembly of Centella asiatica

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Zhao, Yucheng

Description

Transcriptome assembly of Centella asiatica using the raw data in NCBI (PRJNA642665). We using Trimmomatic v0.39 to filter the raw sequences (LEADING:20, TRAILING:20, SLIDINGWINDOW:4:20 MINLEN:50). And then, using RiboDetector v0.2.4 to remove rRNA sequences. After that, we de novo assembly the sequences using Trinity v2.13.2 software with k-mer 31, min_kmer_cov 2.

Citations (0)

Mentions (0)

Metrics

Dataset Index

0.3

FAIR Score

13%

Citations

0

Mentions

0

Metrics Over Time

Publication Details

Assigned Domain

Subfield

Genetics

Field

Biochemistry, Genetics and Molecular Biology

Domain

Life Sciences

Confidence Score

37%

Source

Scholar Data Model

Keywords

60405 Gene Expression (incl. Microarray and other genome-wide approaches)FOS: Biological sciencesGenetics60499 Genetics not elsewhere classified

Normalization Factors

FT

13.46

CTw

1.00

MTw

1.00