Genome assemblies of Xanthomonas oryzae pv. oryzae (PXO35, FXO38, Huang604) and Xanthomonas oryzae pv. oryzicola (BAI35, MAI23)

Genome assemblies of Xanthomonas oryzae pv. oryzae (Xoo) and Xanthomonas oryzae pv. oryzicola (Xoc). Genome assemblies of the Xoo strains PXO35, FXO38, Huang604 and the Xoc strains BAI35, MAI23, have been generated with Flye based on ONT reads. For each of these strains, we corrected the sequences encoding for transcription activator-like effectors (TALEs) with our TALE-correction pipeline (https://github.com/Jstacs/Jstacs/tree/master/projects/talecorrect). For Xoo PXO35, we additionally provide assemblies based on reads obtained from different sequencing methods (Illumina, PacBio, ONT) generated by a collection of (hybrid) assembly strategies and different polishing approaches applied to combinations of these.