allen_brain.h5ad

Anndata format of the adult mouse brain atlas generated by reasearchers the Allen institute (Tasic et al.), together with inferred cell type colocalization information, as described in Dimitrov et al, 2022.

Tasic, B. et al. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nat. Neurosci. 19, 335–346 (2016).
Dimitrov, D., Türei, D., Garrido-Rodriguez, M., Burmedi, P.L., Nagai, J.S., Boys, C., Ramirez Flores, R.O., Kim, H., Szalai, B., Costa, I.G. and Valdeolivas, A., 2022. Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data. Nature Communications, 13(1), pp.1-13.